RNA id: XM_043250822.1


Basic Information

Item Value
RNA id XM_043250822.1
length 2463
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC122352997
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5058497 ~ 5067537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cAAAAACTGTTTGCtagtttgtaaatgtaaaacctCTGGTTTTTATATTCCATCTGAAGCCTGACTGGGTTATGCTCAATAATAATGATCCTTAACGAAAGCTAAAATTCTGAAATGGTCCAGTCAGATTCCAGAATTAAACCCCAACAAAGTATGGTTAAAGTGTCAGGATCTGTGGAACACATTTCACGCTTCAACGCCTACAAATGTCACTGGGCTGAAGCAGTTCTGCAAGCAGAAGTGTGCCAAAATTCCCCACGTATAAATAACTACAGTAAACATTTGGTTGCGGTTATTGCTGCTAATGGGGGTGCAACCAGATACTGGCTACACCTCCATTAGCAGCATTACATACAAATAGCGCTGAATGTTTTATAACCATctttaatgaatgcatgaaaGATTCAACTTGTTGTGTTGTTTATAAGAATTCATGAAAGAGTTCGGATGAAATTCCAGGGGAAGGGGGCAAAAACTTTTTCCAAACCGTTGTTCTTGCCAGTTCAATGCAGTTTATGTGTACtgggttttaatttttcttatgAGGTGTCACACATTATCTTCTCCAATGGAATAAGAAAATCTTGACACACTTCCTCTTACGTCAGTACCGGGGTCGAATCGCGCTCCAGGAGATTGATGTTACATAATGCAATGTTTCGGCATTCATCAGAAGATATCATGTGTCGGCCTAGACTTCGCTGAGTGATGTATACACCGAGTAAATACAGGAGCCAATCAGAAGACAGCTCTCCCAAGGGTAATTTCAAGCGGGAGGGAGGGCTAAGTATCCCCTTGTGACCCAACTGGGCAATGAAGGGCTCAAAGGAACAATGGCCTCCAAGCAGTCAGATCTTGCAGAAGACTTGTCATGTCCCATCTGTGGAAGTATCCTGCAAAAGCCCGTAGTGCTGTTTTGCAGACATCACTTCTGTAAACACTGTTTGGAGAGCCTGTGGATTGGTGGGGGATCTTGCGAATGCCCCCTCTGCTGTCAGCCATCATCTATGGGGGAGCTCATAGTCAACGCCACACTTGCGAAGACCTGCGAAGGCTTTCTGGAGCGCTGCAGAAATGACCCTCTTGCTTGCAAGGAACATGGCGAAGCCTTGACACTCTTCTGTTTGGAGGACCTGGAACCCACTTGTAGCAAATGCAAATCTTCTGCCCACCACAAGGGTCACAGGTTATACCCCTTAAATGAAGCTTCACATGACTGCAAGGAGGAACTCAAAAATGCTTTGAAACCACTTCAGGAAAAACTAAAGCTCTTCCGGAAGGCAAAACTCACTTGCGAGCAAACAATACACCACATTAAGAGTCAGGCAGAGAACGCCGAGAGGCAGATACGAGAGGAGTTTGAGGCTCTGCACCAGTTCCTGCGAGACGAGGAGGCATCCAGGCTTTCCATGCTGAAGCAAGAGAAGGATCAGAAAAGGCAGATGATAAATGATAAGGTTGAAGATTTGGAGAATGACATCACTTCACTTAGCAACACTATCAGAATAGTTGAACAGGAGATGATGTCTAAGGATGTACCATTCCTCAAGAATTATAAAGACACCATAAAGAGAACCTGGCGTATTCCCCAGGATCCACAGATGATAACAGGTTCCCTGCTCGATATAGCCAAACATCTAGGCTCACTGAAGTTTAAAGTCTGGGAAAGAATGATGGAAATCATTCAATATACTCCAGTGACCCTCGATCCAAACACTGCGGCAAGCTGCTTCCTCCTGTCAGAGGATCTGACTACAATACAGTGCTGCGCTCAGACCTTCAAACTCCCAGAAAACCCTGAGCGCTTTGACATAGGTGCAGAGGTGCTGGGCTACGAGGGCTTCAGCTCGGGGCGACACAGCTGGGACGTGGAGGTCAAAAACAACACCTACTGGGTCATTGGAGTCGCAAGCGCATCCATCAGCCGGAAGGGAAAGCACGTGTTGACCCCTGCAGAGGGCTTCTGGACCATTAGGCTACGAAACGGAGAGTATAAAGCCTGCACCGCCCCATGGTCCCCGCTCACTATGACTAAGGAGCCGCAGGTGGTGAGGATCGTGTTGGACATGAACAGGTCAAGAGTGACTTTCTACGACCCACGAGAAAGAACGCCTCTCTTCACCTTCATGGACATCATCACTCCGAGAGCATTCCCATACTTTTGCAGCGCCTGTAAGGAGCACCCCTTGAAAGTGCTGCCAGCCTGGATCTCTATCAAGACAGACTGATGAGAAGAACGTCCCTCTCAGCATTTCTTTCCTCTAGTCTCTCCTCGTGTTTCTTTTGAGTGAGCTAGGATGGAAATACACTTCAGTTCTACTTGTTTCGGATTTCGAACCTGACGACCTGGACAGCTTACTTAAAGGGGTGTCGAGATATACCCATATTGAAGATGATATTGACATTGggaaaaattaatattaaatgttgacTGTATTACACTATAATGCTGgttgttactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110831 lncRNA upstream 38967 5019196 ~ 5020801 (+) True G74889
TU110834 lncRNA upstream 39362 5019196 ~ 5020406 (+) False G74889
TU110833 lncRNA upstream 39362 5019341 ~ 5020406 (+) False G74889
TU110824 lncRNA upstream 57326 5000682 ~ 5002442 (+) True G74882
TU110811 lncRNA upstream 109911 4949549 ~ 4949857 (+) True G74873
TU110849 lncRNA downstream 6391 5073928 ~ 5074206 (+) True G74902
TU110855 lncRNA downstream 19743 5087280 ~ 5087591 (+) True G74906
TU110857 lncRNA downstream 30107 5097644 ~ 5098564 (+) True G74908
TU110863 lncRNA downstream 40248 5107785 ~ 5108114 (+) True G74914
TU110852 lncRNA downstream 49329 5116866 ~ 5117649 (+) False LOC122352404
XM_043250595.1 mRNA upstream 10619 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 14230 5038850 ~ 5045538 (+) True LOC122352867
XM_043250593.1 mRNA upstream 14648 5038846 ~ 5045120 (+) False LOC122352867
XM_043250594.1 mRNA upstream 21263 5035033 ~ 5038505 (+) True LOC122352868
XM_043250597.1 mRNA upstream 25284 5032154 ~ 5034484 (+) False LOC122352870
XM_043249821.1 mRNA downstream 50312 5117849 ~ 5123373 (+) True LOC122352404
XM_043251132.1 mRNA downstream 265473 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 344146 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 344147 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 344147 5411684 ~ 5444613 (+) False kcnn2
TU110461 other upstream 559668 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 939321 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1012814 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 1017074 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1365172 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 50314 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 53952 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 170891 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 177053 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 189301 5256838 ~ 5258823 (+) True G74965

Expression Profile