RNA id: XM_043250832.1


Basic Information

Item Value
RNA id XM_043250832.1
length 4808
RNA type mRNA
GC content 0.53
exon number 17
gene id auts2a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10481653 ~ 10762897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATCTCCATCCTCTGGCATTCTGCACCGACACGGACCTCTCGCCCCGTCTGACCTGTATCACTGCCCCTAGGCGCACTACACGCTCCGGGCCAACGGCCGACACCATGATTAAGTCCAGCTGGTTCTATGTCAAGTTCAAATATAACGAGAAGCTGAAGCCGGGCCAGAACAACTGTAAAGAGAGCGACAGCGACAGCGTGAGCGGAGAATCCAAACCCTCCATCCGGAGCAGCTCCAGAGATAGACTGACAGACTGTGACAGCGAGAGTGACCAAGAAGACAAGgGCTCAGATGCCAGCTCAGAGAAACTCTTCAGCACAGCTGCAGTTAAAGTTCCAGATTTTAGCGTTGACACGCTCTCCACCAATGCCAGCCAGGAGCTGCGAGGCCTGGGCATTCCCAAGGTGTCAGGCCTAGAGCGCAGTCAAGAGAAGAGCCAGGAGACGTCCCGTGAACTCTCCTCGGCCACCCCCTCATTGGTGCCCACATCTCATCCCAAACCTCCCCTCCCCGCCCCCCTTCACGTCCAGCCACCCCCCTCCAACAGGGGGTTACCCTTGCCCCCAAGCCCAGCCCAAACCCAGCACCCTTGCCCAGAGCGTCCACTGAGACCGCTGTCACCCCCTACCACCCTGCCTCAAACCCAGGGCCAAGAGCCCTCTCAGGCACCCCCAGCCCAACCTCAGCACCCACCTGAGCCCCCGCCTCATCCAAGGCCACCTCGAACTCCAAGCATCTACCACCACCCCCCATCACCAGCGCTACCGACCCAGCAGAACCCCACCCAACCTGTGCAGCACAGACCACCCTCACGGTGCCATCCGCGCCCAATCTCGGCCTACAGCGGAAGCCTTACCCTCAACGGCCTGAGCAGCAGTCGAAGCAGCACTCCAGGGAAGCCCCCGGGCCCCTCTCCAGCCCCTCATCTGCACCATCACCAACCTGCCCCAACTGGGGCAGCGGCCTCCTTCCCCCTGCCCCTGCCGGCAAACCCCACGGCTTCGCACACCTTCCCCCCCTCCCTGCCACCCTCCACTCTTCCTCATCACACCAATATGTTTGCGTCGCCTGCTGCTCtgcctccacctcctcctctcaCCTCAAACACTCTGCCGGTCCCTGGACACCCAGCTGGGAGTGCCTACTCAGAACAAGACCTTCTCCGGCAGGAATTAAACACTCGTTTCCTGGCGTCTCAGAGTGCTGATCGCGGGGCATCACTGGGCCCCCCTCCATACCTGCGGACTGAGTTCCACCAGCACCAGCACCAGCATCAGCACCagcacacacaccaacacacacaccagcacaccTTCACCCCTTTCCCCCACGCCATCATGCCCACGCCTGCACCGCCCATGGTGCGTACCCCAGCCAGAAATTTCGACAAATATCCCACTAAAGTTGACCCCTTCTACAGACACAGCctGTTCCACTCTTACCCCCCAGCGGTGTCTGGCATTCCGCCCGTCATCCCACCAACGGGGCCCTTCGGATCTCTGCAGGGAGCGTTCCAGCCCAAGACCTCAAATCCTCTAGACGTGGCAGCCAGGCCTGGAGCCGTCCCACACACACTCCTTCAAAAAGACCCTCGGCTGACAGATCCGTTCCGGCCGGTTCTCAGGAAACCAGGAAAGTGGTGTGCTATGCATGTTCATATAGCCTGGCAAATCTACCACCACCAACAGAAAGTAAAGCAGCAGATGCAGGTTGACCCACACAAGCTGGACTTTGGCCTCAAACCAGAGTTCCTAAGTCGACCCCCAGGCCCCACCCTTTTTGGAGCTATCCATCACCCTCACGACTTGGCACGACCCGCATCGCTCTTCTCAGCAGCAGGGGCCACACATCCCTCAGCTGCACCTTTCGGACACCCTCCACATCATCCTAGCAATTTTCTTACCCCAGCACCCCACTTAGAACCCTTCAACAGGCCGCCTTCGTTTGGAGGTCTGGCCTCATTAAGCACTGCAGCCTTTGGTGGGCTGGGAAACCCAGCACTCGCATCCAACTCTGTATTTGGCCACAAAGATGCACCCAGCGCACAACAGCACTTCAGCGGACCCCACGAGCCATGGAACAGACTCCACCGGACCCCGCCGTCCTTCCCCACCCCACCTCCCTGGCTGAAACCTGGAGACCCTGAACGAAGCGCGTCTGTCAGCTCCCATGAGAGAGAACGTGAacgagagagagaacgagaacgggacagagagagagaacgtgaCCTGGACAAGAGGGATTCATCAGTCAACAAGGATGATAAAGAGCGGGAACCTGCGGAAAAGAGGCACCAGAATCACCAATCTCCGATTCCTGTGAACCCCCTCACTCTGATGAGTCACACACGGTCGTCTGAGCCTTCCCGGAACCACATCCCTTCTAGTGAGTCTCGGGACAAGGACAAGTCCAAAGATCGCGAGAGAGAGCGAGATCACTCGGACTGGAAAGACTCCAACACAGATGAGCACAAGGTGAAGGAGAATCACCACAGTGACAAAGACACTCCTGTCATCCACGACGGCCGAGTTTCTGAAGACAAGCCGGCCAATCGGGTTACAGCGTCACCCTACATGCGGCCAGGCGGCTTAGATCGGGTGAATGGCGGGCTGACTCGAGATGTGTTAGAGAAGAAGGCCGATATCACCTATGAGAAGAAAAACAGTGAGATAAAGGTGAAAGAAGAGAGGAAAGAGGAACAGGATGGTCCCACGGAAAGATCCCCAGAACAACGATCAACACCGCAAGCAcctcctccccctcctcctcctcctcctgctgctcTCCACCCTCCATCTTCAATGCCGGTACCCATGGGCATGGCCGGTATGCATCCCATAAACAGTATCAGTAGTCTGGAGAGGACTCGTATGGTGGCCCCGTTCATGGGTATTAGTCCCATCCCAGGGGCAGAGAGGTTCCCCTATCCTGCCTTTCACTGGGATCCAATGAGGGACCCTTACCGAGGACTCGATATCCACCGGAGGGATCCGTTAGCTCGGGACCTGCTACTGCGGAATGACCCTCTGCACCGGTTAGCAGCACCGCGGCTTTACGAGGCAGAGCGCTCGTACCGGGACCGCGAGCCTCATGACTTTAACCGAGACCACCCTCACGGGCTGACCCTGGAACAGCGGCGGGAACAAGAGCGAGCGCACCTAGAGGAGCGGGAACGTCTGCATTTGCTCCGAGAAGACTACGAGCAGGGGCGTCTGCACGCGATGCATCACCCCGCTTTAGACGGACACCTCCCACACCCGGGTCTCATGGCCCCTGgacttcccagcatgcactacCCCCGTGTAAGCCCCTCCTCTGCCGTGGCTGCCCAGAATGGAATCCTCAACAAAACCCCTCCCACCGCATCGCTCAGTGCCCCACCTCCTCTTATCCCAACTCTGGGAGCGCGCTCCACGTCTCCCAGACGGACTACCCCACTCGGCACTGACATTAGAGACAGacccccctcacacacacacaaagacattgAGGCGCGGTGAGACCCCCGGTGGACTGTCATGGAACTCAAAAGCAAGCACTTGAGGCTGTATCATATCTGTGTATAGATTGTGCATTactgattgttttatttgtgttgagttttgtttttgtacaaaagACTGAGATTTTTTCATGCTCTTTTATCCCGTTCGCTCCTGCATTGATGTGCATTCTTAAACATGTACAGTACACTGATCTCGAGCAAGTAGACGAGCGCTAGATCTCCGACATGGAAAGATGATCTTGGAATGTACAGGTACCTCAGTACGTTGCGAAAAGGCAGAACTTGTAGATATGTGTAAAGTTGGTGTGTTTCTCtccttgaggaaaaaaaaatttaaggtACAAATATGCAAATGGGTGTTATGAAAGCTTTACTTTAAAATGCTGTACATAGTGGGCAGTGATCAAAAGGAGAGCGAGCGAGCGCACAGGCTCTGGTTTTAGTTTAATGCTGCATATTAATGGTTTGGAAGGATCATATTGTCCAAGAGACCACATCCCTTCTTTCAACTATGCAACTCTTGCGtgggctctctctctctgtatcatTTTTCTCTTCTCTAGAGGACAACCAGTCTCTACTGTACCGTCTCAACAGTACATGCTTACACATTACTCGGATCGTGATTGTTCCTAAATGGAGGTTTTCATGTTTTACTCACACATATGACGTTCCCTAACTTTTGATCCAGAAACATGCTTTTGATCTTCAAGCTATAAAGATCTGTGTCGACAATCCTTACAAATACACCAATGTTCTAAGAAGCTAACAAAACCTAAATTCTCTGAATAAATTACCTctaaatcaaaagcaaaaattaCAACACGTCCCATCATGTCATGAGAAGTCTGAGTACAGAAAGCAGGACAATTCTCTATTGGTCTAGCtgtgttttaaagtgttatGTATCTACACAATGATAAAGCGAGTTGTAAGCTATggacagtttgtttttattgagcAGAGATCTATTTTAGTAGTCCATGGGAGGGATAGTTGTGCGCTTTTAAACTCTGTGAAATTCTAATGttgtgcagtgtttttttttttttttttctttaattttctctactttttttttttttaatcaaacattaaaatgtccACTGAAGCAGTAGTGGGTAGTCAATACGTATTGCAAAGAGATTGTAAGAaacttttttgctgtttatcATGTACGTAAAAAAATGAAGTCCTTTCTAGATCATGTACAAAAAAAGGGTGAGGCGACAGCATGCTCCTCAGTTAAACTTGTGTTATGTAAATTGTGccatgttattaaaaaatgtgaactAATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113180 lncRNA downstream 21254 10436192 ~ 10460399 (-) True G76489
TU113191 lncRNA downstream 25141 10455591 ~ 10456512 (-) True G76493
TU113174 lncRNA downstream 36497 10424615 ~ 10445156 (-) True G76488
TU113138 lncRNA downstream 69815 10403957 ~ 10411838 (-) True G76458
TU113081 lncRNA downstream 164253 10317071 ~ 10317400 (-) True G76426
TU113376 lncRNA upstream 191151 10871806 ~ 10872087 (-) True G76618
XR_006251956.1 lncRNA upstream 266377 10947032 ~ 10950467 (-) True LOC122353057
TU113386 lncRNA upstream 279281 10959936 ~ 10987235 (-) False G76622
TU113385 lncRNA upstream 280505 10961160 ~ 10987235 (-) False G76622
TU113383 lncRNA upstream 305744 10986399 ~ 10987235 (-) True G76622
XM_043250872.1 mRNA downstream 83429 10390116 ~ 10398224 (-) False cnih2
XM_043250873.1 mRNA downstream 83595 10390116 ~ 10398058 (-) False cnih2
XM_043250874.1 mRNA downstream 84008 10390116 ~ 10397645 (-) True cnih2
XM_043250725.1 mRNA downstream 97005 10383532 ~ 10384648 (-) True LOC122352948
XM_043250724.1 mRNA downstream 98321 10382676 ~ 10383332 (-) True LOC122352947
XM_043251066.1 mRNA upstream 193157 10873812 ~ 10891764 (-) False ints2
XM_043251065.1 mRNA upstream 193157 10873812 ~ 10891764 (-) True ints2
XM_043250187.1 mRNA upstream 212138 10892793 ~ 10945715 (-) True med13a
XM_043249941.1 mRNA upstream 292226 10972881 ~ 10983737 (-) False rps6kb1a
XM_043249940.1 mRNA upstream 292226 10972881 ~ 10983736 (-) True rps6kb1a
TU113196 other downstream 1464 10478059 ~ 10480189 (-) True G76498
TU113101 other downstream 98344 10380096 ~ 10383309 (-) True G76438
TU113103 other downstream 98344 10380096 ~ 10383309 (-) False G76438
TU113102 other downstream 100606 10380096 ~ 10381047 (-) False G76438
TU113078 other downstream 203952 10267354 ~ 10277701 (-) True fgf13b
XR_006251870.1 other upstream 295673 10976328 ~ 10983737 (-) False rps6kb1a
XR_006251871.1 other upstream 297281 10977936 ~ 10983738 (-) False rps6kb1a
TU113393 other upstream 336455 11017110 ~ 11038731 (-) True G76625
XR_006251915.1 other upstream 495914 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other upstream 495914 11176569 ~ 11205227 (-) False LOC122352715

Expression Profile