RNA id: XM_043250849.1


Basic Information

Item Value
RNA id XM_043250849.1
length 5669
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122353014
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7362680 ~ 7371933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCCGTTTtctcaaaattataattttttcttctaCACTGAGCCATACATTtccacttcagcagcacttaCACACACCAGTTTTATTAACGGTCACACcctgaagttttttttacagaggaagtcgttcataaatcattttcttgATTATACGCAACATTTATgtacacacaatcacacaaaaaTTGTTTTAGTTCTAAGCATATTCAAAATTGTGgagtatatacaaaaaatagatgtttaaaatatcttctgtaAAAAGGTTTAACTctaatatgtcaaaaaaaaatcatccagtGGATATATTGTTGTACTAGAAATCATTGCAAATTAGCGCCATCAGCTGGGGCTGAGGCAttaactatttattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataggcgaGAGGTATGCTCCTGGGATTGTAGAATCTCTGATCACATTGTTGTTAAAGGCTGACATCTAGTGTTAAACTTTGGACATCTGCACATGTAGAAAAACAGACAcagatcatttacaaaaaaactctacattacaacacacacacatacacacacacacatatacatatatccGTGGGGATGGTTTGTGGAATATTTCTTTTAACTTTctgaaaaggaaaggaaaagaaaactgATTGATgttgtgactttttaaaatttagaaCTGGTCTAAACTAACTTTTCTATGTATATAAGATACATATAACACATATACGTAAGATGTGTGCATATTATATCTGTAGAAATCTGATTattccaataaaataaaattgcaataaaataacttttagatGTTATTTATCATTTTCCCCCATTTTCTTTCCCAAAGcaattatatagaaaataatacaCAGTAAACCACATGTTATTACACATTGGACAGgctttaaatcaataaaatctcattttaaaatctaataaaaccAATTTAATTGAccatctaataaaataaaattattttttatttaatgtttgattttaaatcatttatttttgttattttctttgaatttcCCTACTTTCAACAGTTTTAAGAGAATCAAAAtcacaaataacaaataacatttcatttcattttcagcttCATGCAAAAATCCAAACATTCCTTTACCTCATCCATCAACCTGTTTTTCTATAATGTTGGTAATTTTCACACAACCCCTTGGCACGCACacaacctctctctctctctatctctccctttctatctctctttctctccccacCCTGCCTAATTTCAGCTGAATTTAGGATGCCTTTGACCCAGCACTGGATATGCATATGTGAAGCAGggtgagacagagagatagggtgagggacagacaggaagagtgactcagagagagagagagaaagcgagaaagagagagtgcgCAAGGCTGAGGACACTGATCAATGCATCTTTGTGCTTGCTGCCTCAGCAAGTGAAGGTGAGagcaaatcaaaacaaatgaaaagcaGACGCCTCTGGAGAGAAGCAAACAGCCTCCAATCAGCCTCTGAGGGAGGATGATTACTGTCTGCGGAGAGCTAGAGGAGTGACTGTCAAGGCAGGTGCTGTTTAAACACAAGCTCATGTGCGGATTTGAGTCATCTTAGAGTCTCCTCACTGCACCCACTTACTGGACAGCGAGACCTTTTGTGGATACTGAAAGCTTTAGAAAAATACCTGCACCATGGCAGGAAGCTTTGGGGGTTCGAGTCTCAGGATGTAACTGAAGGTGCTCCATAGTGGTCAAATGCATTGATTTCCACTCAAGTCTGCCTGGACCAGTTATACTTGAGATGGGTAGACGGGCAGCTGATCACACCACTACAGTGCCAGTTCTCGGAGAGCCTGCGCTTGTCGGGACACGCGTCTGGAGGGCCGTTGCAAATGGGACCAGTAGTATGGCGACCCTCACGCTGTCTCATCACTGCAACGTCGGTGTGCAGACGTCACCAGCGATGAGAAACAACCAACTACAGCTAAACGGCAAACATGTGGACGCTTGTAGCGGTCAATCAGAAAACAAAGTGATCATGCCACCTAATGGCCACATCCCAAACGAGGCTGGTAAAAAGGATGACAAcgggaaagaaaaaacaaaaagtataatttataaacGAAAAAGTCTAgagactaaaatgaaaaagggTGTGACATTTGAGGGACTGGAAAGggatatttgtaaaaacatcaGGGAAGAAGTGCAGTGCCATAATCGTCCGATGAGAACCAGTCCTCCGTTGAGAGGTGTGGCTAACAGCAGGTTCAAACTTAGAAGAAACTGTCACTTTACTAATGGAAGTGTGGTGGACTCTGAGGTGATGGGTGGGATCAGCAGCGACGTCAGTGAAGGGGAGGAGTCTACCACGGGAAAGAAAAAATCGTTACCTCCTCGCTCACCTCCTCACAGACCTCCCGTGACCATCTGCAGCACTTGTGGAGGAAGGCAGAATGCAGCACCTCCTGGACTCTACAGCAAAATAAGGATGATTACACCGCCAACTTCGGCAGGTTCCCTGGGACTCCAGTCGAGACATTCATCCCCTCTTTACCCTGGGAAGGACGTGCAGGAGTACACGCAGATAGAAAGGCACACCGACCGCAGTGCTACACAGTCAGACCAGCACCTCATGAGCCCTAACCTTCGTTCTTATCTCAACATGAATATAAACAAGGAATGGCCATTATCTCTGCTGCCTGCTCAGCAGAGTGAGGCATCAAACCTCACTAATCATCACGCAGTCAAGAGGGAATCTAGTGCTGACACACACATTAATCATACCAGTCGCTCATCGGctctaaatacacacacgctcactgTTACCGTGAAAGAGGATAGAGCCTCAACAAAGGTCGTAAACACACACTTGAATGCTTACAAACCTCACAACTCTTGTCCCCGCAGACCTCCTGTTACTGTCAACCCTCcccaaacacaaaaaaacagcctGACAGAGAAGCCAGAAGCCACACAGGTGACAAATACCAGAATGCCACACACAAACGTTCACTTTAGATCATCCTGCCAGCCAAACCCTGATGAGAAACGACCAACTCAAGGAAACCAAGTTGCACCTATACACTCAGAGTCCCCGAGCCgcaaaataaaattcacatcAGACCTTTGCAAACTGCTTTGAAAACCCAAATGTTCCCCCAAACTAGCACACCTCAGAACTCCAATGCACTTTCGAAATGCTCACGGCTAAATCAGACAAGCACACTTTCGAAATCCCCTgactgttttcatttacattccAACGCTAAACGCCAAACTATAGTGCAGAGTTGTGTGAATGAAGGTGTCATTTCCTCCGCCGCTTCAAACATTCACAGACAGGTTCAGTTCCCTAATGGATTAGAGTCCAAGTTTGACACGCACACTAAACCGTCAATGTGCTCACACACAAATTTCGGCATTAAACCTCAAAGCGGGACGCAAATCTGTGCTGACACAGAGTCAGAATCCTCACCCTGTGATTCACGTTCGCATTCTGTGCTggcgacacacacacataaactctCAGGGCCTCACAGTGAACCGCGTCACGCATCGATACACACAGGCGTTCCTTTGCCCACCGACACGCACAAGGAAGCTTCCCACACATCCACCCAGCGAACAAACACCAGTGGAACATCACTGCAGGGTATATCTGTGCGTAAAGACGCACTGTCACATCCTTATCGCGAGTCAAAAAGCCAAAATGACACGCGTTTGTTTTCACATGCCCCAAATATGTCAACCCATCACAAAGCAACACTTACGACGCAAACAATCAACCATCAGAACCTCTCAAATGCATTTACCGCCACTCAGACGGAGGTGGAGGTGCATTCGTACACCAAAGAACGTTCTCAAACAAGCCCCGAGGTCAAAGCAGCCTCGCGCGCTTTGTGTGTTCATTCGAAAATGCCACGTAGACAGACAGAGCCTACGGTTTTCAGATGCTCTGTCCTGAATCAGCTTAATAATGACACTCTTGAGTCCTCATTACTAGCCATCGCTTCCGCTAAGGCTTTTCCTCAAGCTACAACACACACTGAATTTAAATCTTGGAGTGACATAGAGTCTAAGAAACAAACAGATATTAAGACAGCGGAACCAGAAGGTCAAATGACCAATTTGCTTCAACCTCCAAATAAACCACCTCCTTCTTATAGACCTCCTAAACCTTCATCGGCACCTCCACAAGCACCAGCTTTTAAATTCGTAAATGGGGACCTGAATGTGGCCTCCGATCAAAACCCACATCTGGAAGCATCAGGCAAGAAAGACAGGAGTCTCCAGAACTCAAAGACACACATGGAATCTCGTTCTGAAGAGCTTGGTTCCATCCCAAGTGAGCGCTGTTCCATAACACACGACCATCCGGATTCTGCGGCCCGGTTGCTGCCAGTATCACCTCAGTGTGGTAGTCCACGGGACCCAAAGTGTAAACTAAAGATGGTTGAGGCGAGTCTTCAGTCAAACAAGGAGAGAGTCACAACTCTGCTCAACGTCATCCAGGACCTGGAGATGAGCCATGCAATCAGCAAAGGTCGGCGATGTTTTCGGACTGGCCAAGACCTCAGTGACTGTTCCACCTGTCAGAAGACTGCATGTGCTGTCTACAGTGTGGAGTATGACTTCCGTCAACAGGAGAGAAGATTCAAGGAGCTCCTCCAGAGTCTGTGCCCATCATCCCCAGAGAGAAGAGAAGGATATGAAGAATCTCTTGCTTTACTCACCTCACTCATTCAGAATCACAAATTACACCAGCTAAACGCAAACATTATGACCCAAAGCCAATCTGAGAGTCAAAGCCACAGTCAGCCTCAGATTATTTCTCAGATTCAGTGCAAGATTCGGGCTCAGTCTCAGCCTCAGCCTCAGATTCAGTCTCGGTCTCAGGCTCAGCCACAGATTGTGTCTCGGGTTCAGCCCCAGAATCAGTCTCAGCCCCAGATTCAATCTCAAAATCAGATTATATCTCAGATTCAATCCCAGAATGAGATTATGTCTCCGATTCTGCCTCCGATTCAGATTATGTCTCAGATTCAGTCTCAGGCTCTCCCCCAGAATCAATGTCTTTTCAAGGCTAAAATCAAAAGGAAGAAATTATGCAGGAAGCTGTTTAGCTGGCTGCCACACAAAGTCCAAAGGAAATGACTACATAATGCCAAGTATCTGATTTTCATGCATGACTCTCAACCCTCTGGTATGTGGAGTCACAACTCCTTTTTCTCCTAATGCAGTCGGAAGACTGACATATTTTGTGGAATGGAGCAATATTACATGGCATTCTTTGACTGAACTACACAGGAGGATTTAAATTATGAAACTAGTTTTCCTTGGAAAATGAAATGGTacaacatttactttaaaaattaattatactaTTTCTCTACAGTTACAATGGACATGATGCTTGCCTCAACTACTTATGGAGGGTTTTGCACTTAAGATGCTTTTTTAGGACATGATGTTATGAGTATATAGTTCATCACATCCTTTTTGATCTTCCAAATGGACAGCTATCATCTGTTAAAGCCAGAGGACTGTGATGGGACTGACATATGGAGCTTCAGTGGCTGAATTTTAGCTAAATAAACCACAGGTTCGAGGTTATGCAACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 369472 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 376783 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 603035 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 706770 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 712275 6644036 ~ 6650405 (+) True G75361
TU111791 lncRNA downstream 26112 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 27495 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 30200 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 115542 7487475 ~ 7488567 (+) True G75502
TU111884 lncRNA downstream 310221 7682154 ~ 7682440 (+) True G75574
XM_043250850.1 mRNA upstream 142 7361078 ~ 7362538 (+) True cbln17
XM_043250994.1 mRNA upstream 22485 7329669 ~ 7340195 (+) False LOC122353118
XM_043250087.1 mRNA downstream 9143 7381076 ~ 7386994 (+) True hrh2b
XM_043251170.1 mRNA downstream 78984 7450917 ~ 7483453 (+) True kcnip1b
XM_043251172.1 mRNA downstream 94137 7466070 ~ 7483453 (+) False kcnip1b
XM_043251171.1 mRNA downstream 100604 7472537 ~ 7483453 (+) False kcnip1b
XM_043250951.1 mRNA downstream 112469 7484402 ~ 7487356 (+) True npm1a
TU111640 other upstream 105451 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 141152 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 201417 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 201417 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 212099 7142293 ~ 7150581 (+) True G75422
XR_006252001.1 other downstream 489313 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 489660 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 490027 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 491846 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 500606 7872539 ~ 7879241 (+) False arrb2a

Expression Profile