RNA id: XM_043250850.1



Basic Information


Item Value
RNA id XM_043250850.1
length 938
RNA type mRNA
GC content 0.44
exon number 5
gene id cbln17
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7361078 ~ 7362538 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tttcctcaaaccCAAGTGTTTTGCCTGCATCAAGATGAAGGTGAGTGCTGCTCTCCTGCAGCTGCTGTGCTGTCTTCTGCTCACTGAAGGACAAACGGAGGTGCCGGATTTTGAGTCCAATGGAAAAAGCATCCAGCCCAACATCTGGACCGAGGTGAGAGATATAAGAGACATGGTGATTGAGCTCAAAGTCAAGTTGGACATGGCGATGAAAGAGAACGCAAAAATGGCAGAACAAGTGCAGGAGCTGAAGAAAGAGAATTCAGGAATTACtgatcaaatgaaaataatcgaAAACCAGCTGAAAGgaattaagaaagaaaatgaagAACAACCAAAAGTGGCGTTTTCAGCCGACCTAGGCATTCGAGGGGATTTAGGTCCTCAGAGTACTGAGATCACGCTGACGTTCAACAACATCTTCACGAACACTGGGAACAGCTACAATCCAGCAACAGGTCTCTTCACTGCACCGGTTAAAGGAGTCTACTACTTCAGATTCACCGCGTGCGGTACTCAAAGCGCACAGTCGCTGGGGGCCAGTTTGCATAAAAACGGGCAGAAGATCGTGTCAGTGGGCCAGTGGCGTAATCACAATCTGCACAGATACGCATCAAATGGAGCTGTCCTGCAGCTGGAAGTGGGTGATGTAGTTTGCGTGAAGCTCCTCCCACATTACACCATCTATGACAGTCCAGATAACCTCAGCACTTTCAGTGGATTCCTCATTCACCCGTTAAAGTGATCAACCATCAAGCACGTTGTTCTCATGAAAACTGCACAAATCACacttatgctttattaatcatatATTCACCGTGAAAAAATCCAACTGCAATAATGATTTCATATGCTATTGTTTGTATTAACtacttttgtatttatgtaatagCATATTAAACATACCAATTTAAGAGGAGACACTAcaggcaaaaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 367870 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 375181 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 601433 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 705168 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 710673 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 2879 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 35507 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 36890 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 39595 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 124937 7487475 ~ 7488567 (+) True G75502
XM_043251017.1 mRNA upstream 20883 7197537 ~ 7340195 (+) False LOC122353118
XM_043251035.1 mRNA upstream 20883 7197538 ~ 7340195 (+) False LOC122353118
XM_043250997.1 mRNA upstream 20883 7200446 ~ 7340195 (+) False LOC122353118
XM_043251023.1 mRNA upstream 20883 7200447 ~ 7340195 (+) False LOC122353118
XM_043251000.1 mRNA upstream 20883 7208597 ~ 7340195 (+) False LOC122353118
XM_043250847.1 mRNA downstream 142 7362680 ~ 7371933 (+) True LOC122353014
XM_043250848.1 mRNA downstream 142 7362680 ~ 7371933 (+) False LOC122353014
XM_043250849.1 mRNA downstream 142 7362680 ~ 7371933 (+) False LOC122353014
XM_043250087.1 mRNA downstream 18538 7381076 ~ 7386994 (+) True hrh2b
XM_043251170.1 mRNA downstream 88379 7450917 ~ 7483453 (+) True kcnip1b
TU111640 other upstream 103849 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 139550 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 199815 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 199815 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 210497 7142293 ~ 7150581 (+) True G75422
XR_006252001.1 other downstream 498708 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 499055 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 499422 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 501241 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 510001 7872539 ~ 7879241 (+) False arrb2a

Expression Profile