RNA id: XM_043250851.1


Basic Information

Item Value
RNA id XM_043250851.1
length 3138
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122353016
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10184794 ~ 10191230 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGCGTTTCATAAGGGGCTGCGGTCAGTCATGTTTcataaacaaaacagagaagACTGTTTAACTGTCAAATTGGTTACAGAAGAGAGGAATTTCTGATGTATTCCTTTGAACGAAGAAGAAAGTCTTTAATCTGTTTGCGTTGTTTGCACAAGTGAGCCGGACGCAGACTGATAGCTGTCCAAGGTGGCTTTTCCAGACACCTCCTCGACGCAATGAAGAGGCTGTTCTTCATCGAGCCGATCGTCGCGATTTACGCGTTTGCCAGTTTTATGGTGTATCCCCTCGTGCAGCAGTACGTGTATCGCAGATTGTGGCTGGAGATCACAAACTCTTCTTACCCCGTGTCCGACAACACCACCCAGTGCGCCGTCATCAACACCAGCCACAGCACACAGCAAGATGAGGTGCAGAAAGCAGCTTCTCTGTTTTCCATGTACAGTGATTTGTCTACCATGATCCCCAGCCTCCTGGTGACCCTCCTCCTGGTGGCCTACAGCGATCAGCGCGGCCGAAAGTTCACGATCATCATGCCCCTCATTGGGTCTCTGGTCTACTCGCTTTCTTTTCTGGCGGTCTCCTTCTTCGAGCTCAACCTCTACCTCCTCATTGGTGCCAGCTTCTTGAGCGCCCTGTTTGGCGGCGTTGGCACCATGCTAGGCGGCTGCTTCTCCTATGTGGCCGATTTGTGCGAGGACGGCAAGCAGAAAACCCTTCGCATGGCTGTGGTGGACATGATGATCGGCTTGCTGGCCGGCGTGGCGTCAATCTCCACGGGCTACTTCCTGCATACAACCGGGTTCAACTGGCCTTTCTTCACATCCGCCATATTTCACGCGGCAAACTTGCTATACGCCGTCTTCATTTTGGAGGAAACCAGGGTGGTTGACCGGTCAGAGCCTGTGGCTTGTTGTCGGGCCCTGCAGAAACTCGTTTGCGGTATCTACAACTTGTTTGCAGGAGGCAGTAGACAGAGAAAATGGATTCTTGTGCTGTTGATAGTCACTTTCTCCTCCTTATCTTTTGTCAATACGGGGGGTCTGTCCATGATCACACTTTATGAACTCAACGAGCCGCTGTGCTGGAGCGAGATCCTCGTCGGATACGGCGCCGCGGCCAGCACCTCCATCTTTATCACTAGTTTTGTCGGCGTGTATTTGTTCTCCCTCTGTCTGCCGAACACTGCCATCGCCTTCATCGGGATGCTGTCAGTCGCCGTAAGCATGTTCATGACGGCCTTCGCAAAGAACACGCTCGTTATGTTCCTCGTGAGGATTCCTGCTATGTTTGCCATCATGCCGTTCCCTGTCCTGCGTTCGATGATGTCAAAGGTCGTCTCAAAGTCCGAGCAGGGGGCACTCTTTGCCTGTGTGGCCTTTACGGAAACCCTGAGCACTAACGGGTCCTCTGCGGTTTTCAGCAGAATCTACGCGGCCACCGTGGCATGGTGTCCTGGGTTTATCTTTCTGTTGGGTTCTGGACTCTGTATCATTCCCATAAGTCTATTAGGCATCCTTAGGTGTTTCCATTCACTGGATACCAATGACACTCAGGCACTCTTATCAGAAGAAGGGACTGAAGCCTCACATGAGCCACCTGTAGCTTAAAAACAAGGGGAGTTTGGACACGTCATGGTCTCCCTGTGTGGTTCTTGACATTTCCTCATACCGACACATGCGGGTAATCTGTTCAAGCataagtgtatttttgtgtttcgaGTCGCTGCTGccatgaaatatgcatttttgctcaaatgcaGTATATGATTATTTAAGTTTTGGAAGGGAACGGAACTTTATATTTTTCCAAAGGGAAATTTTGTAAaagaagtatttttaaaataataataataaattcagcaaaaactaaatttatattTCCTTAAGGAAATACCAATCGCTTGTGAGGCAGCAACACAACAAGCTAAGTTTAGATTAGGCTTTGATTCAGTTTTGTCCGCAAACAAGGATCAATACGTATAGTTAATGTGAAGGGTGTCTATAAACAAGACCAGTCGTGATTCAGACTGCAAATGGATGTAAGAAAGTTGACGTATCTGATTCAGTAtgcaaatataacaataatataataacctAGGATTAAATAAGGGAAAATAAGGGTTTTAATAGAGCTAAAGAATACATATAGAGTTTGAATGAATTGTATGTACTGAATTGATTGCAGAAGTTAAATACTGAGATTGAATGTTTGAGGAAAATCTGCACATTGCTGCCTTAAAAGTGTCAGGTTTGGGCTGAtgatttatgctttgatttataaagatatatataaaactgtgttttataaAGCATAAGATTTAAAATGCGTCTTTATAGTGTTTTAAAGTTTCTTATTCGCACAGATTTGAGTCATGAGCAGTTTAGCCAATAAGCTCTGACCTGCCATTATCTGTCTCATCTGAAATTTAAGTCAAGGTACGCAAGTAATAAACTGGTGTAGATCAGTTTACTTTGTTTGGAGGCTTAGCTGTAAAAACAGTGATTTTGGAGGACCGGGCAGACCAGTCAATAGATACTTGTGTTTATCTGCCCGTACTTGTGCTCCACCTGCCACACACAAACTTCACTGTTAACACATTCACAACAGGAATGCTTATTGAGCCAttgggaagaaagaaagaaagaagaagaaaaacctctTTCATTTACACAAATATGCTGGAACCCAACTAAGTTTGTTCACTTTTGTGCAGTTGTGATATTGTGTAAGTTTCTGTAACGAAATATAAAGAATTAATGTCTGTTAGCTTTACAGCGTGTAAAACCTAATGATGTGTTACTTGAAATTGTGTTTTCCAGGCTTGGAAATGATCATGTTCTAgaaattattattgtcatttttattgtataatcaGCTCCTAATTCTATTGCAAATTTAGCGTCtgctaaacaaacaaatataaactcACAAAATGTGTCCAGGAGGTGGCAGTATAGACACGCATATAAATATGCCAATATCGTCTCGACACGATTTTAAAGTTGATTGATCTTTcatttgaagtcatttttaaaacttttttttttttaggttaaaatGAAGAGGGTAAGAACTTAATGCCCTCGTGACATACGTTTGCATGctttaactgaataaaacactTTGCTTCCTGGAAA

Function

GO: NA

KEGG:

id description
K20840 SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113040 lncRNA downstream 272 10184094 ~ 10184522 (-) True G76388
TU112932 lncRNA downstream 78615 10098265 ~ 10106179 (-) True G76327
TU112929 lncRNA downstream 161093 10023495 ~ 10023701 (-) True G76324
TU112807 lncRNA downstream 360625 9823035 ~ 9824169 (-) True G76233
XR_006251940.1 lncRNA downstream 421303 9761809 ~ 9763491 (-) True LOC122352923
TU113066 lncRNA upstream 50729 10241959 ~ 10242182 (-) True G76413
TU113074 lncRNA upstream 61795 10253025 ~ 10253861 (-) True G76421
TU113081 lncRNA upstream 125841 10317071 ~ 10317400 (-) True G76426
TU113138 lncRNA upstream 212727 10403957 ~ 10411838 (-) True G76458
TU113174 lncRNA upstream 233385 10424615 ~ 10445156 (-) True G76488
XM_043249926.1 mRNA downstream 25901 10066471 ~ 10158893 (-) True dchs1b
XM_043249930.1 mRNA downstream 136337 10036639 ~ 10048457 (-) True arfip2b
XM_043249927.1 mRNA downstream 136339 10036639 ~ 10048455 (-) False arfip2b
XM_043249929.1 mRNA downstream 136340 10036639 ~ 10048454 (-) False arfip2b
XM_043249928.1 mRNA downstream 136340 10036639 ~ 10048454 (-) False arfip2b
XM_043250135.1 mRNA upstream 76297 10267527 ~ 10283665 (-) False fgf13b
XM_043250131.1 mRNA upstream 98302 10289532 ~ 10303026 (-) False LOC122352632
XM_043250132.1 mRNA upstream 98302 10289532 ~ 10303024 (-) False LOC122352632
XM_043250130.1 mRNA upstream 98302 10289532 ~ 10303023 (-) True LOC122352632
XM_043250191.1 mRNA upstream 184272 10375502 ~ 10377728 (-) True znhit2
XR_006251964.1 other downstream 559389 9589980 ~ 9625405 (-) False LOC122353179
TU112582 other downstream 754994 9427962 ~ 9429800 (-) True G76068
TU112377 other downstream 1628706 8545367 ~ 8556088 (-) False G75913
TU112375 other downstream 1638642 8543097 ~ 8546152 (-) False G75913
XR_006251935.1 other downstream 1657348 8520681 ~ 8527446 (-) False smtna
TU113078 other upstream 76124 10267354 ~ 10277701 (-) True fgf13b
TU113101 other upstream 188866 10380096 ~ 10383309 (-) True G76438
TU113102 other upstream 188866 10380096 ~ 10381047 (-) False G76438
TU113103 other upstream 188866 10380096 ~ 10383309 (-) False G76438
TU113196 other upstream 286829 10478059 ~ 10480189 (-) True G76498

Expression Profile