RNA id: XM_043250887.1


Basic Information

Item Value
RNA id XM_043250887.1
length 2002
RNA type mRNA
GC content 0.41
exon number 5
gene id isoc1
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 204696 ~ 210347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGCATCGGTTTAATTCGCAGTCGCGTGGCATCATGGCGGACACACACAGCAGCAATAACCACGTCCCTGTTTTATTCTCCTTCTCTGTGTTCTCGAGGCCCTCGTCTGTGTCCCTGGGCTCTGGATATGAAGCGCTCATCCAGAAGTTCCTGTCCGTGTTCGGGAATCAGATCGATGTTCAGCGGAAGTTGGTGCTTCAGTGTTTCTCGGAGGAATGGGGACAGTACATTGATTTACCGAAGGGCTTTAAGGTGTCGGAGAAATGTCGGCTGAGATTAGTGCCTCTGCAGATGGATACCACGACGCTGGGAAACCTCTCTCCGGTCACCACCGTCTTCTTCTGCTGTGACATGCAGGAGAGGTTCAGACCCGCCATCAAGTACTTCGGAGACATCATCAGTGTGGGCCAGAGACTGTTGCAGGGTGCTCGTATTCTGGGGATTCCTGTGCTGGTTTCGGAGCAGTATCCTAAAGGTCTGGGCAGCACGGTTCAGGAGCTGGATCTGATTGGGGCCAAATTGGTTTTCCCCAAAACCAAGTTCTCCATGGTTCTTCCGGAGGTGGAGGCTGCTCTGGCTGAGATCCCAGGAGTCCGCAGTGTGGTGCTCTTCGGCGTCGAGACACACGTGTGCATTCAGCAGACCGCTCTGGATCTGATTGGACGAGGGTTCGAGGTGCACATTGTTGCTGATGCCACGTCCTCCAGAAGCATGATGGACCGCATGTTTGCTCTGGAGTAGTGAAAAAGGTACATGTAGCTATATTTGATGTGCATAATTTCTGGTCATGTAATCATAAATGTACCTGTCAGCGTGTGTTGTGTGAGAGCAGATGATCTGAAGATGTGGATCCATCAAGTCTCTGTCCAGATCAAGGTCAGATAGCTGTGATGTTACTGAAACGCTCTGAATGTAGAGTCAGGTTCACTCATTTCTTCTAGAGCTTTAgtttggaggtttttcttctttcagatatTTGAGCCCTTTAGATGTCTGACTCCGTCTGGAATGATGTGGAAAGCATTAGCTTGTTTCTCTACCCTTCCTGTGTATTAATAGATGTTTGTTAGTCTTCTGTACTcagttactgtattttaaagctgtattttccACAAGTGTGGTGTGAACATCAAACTACCTCTCGTACCGATTCATGCTCACAGTTCAGTTAGTTACTTAAATCAAACTGATATTCTCTTTAAACTGTCACAAGATCAACACCTTTACTAAAAGCTGAAGCTCTTTCAGTGGAAgcagaatataatttttttaagaccTGCTGTTACAGAGTCATTTTCAGAGCATCAGATTTGGTTCTACATATTTCCAGAAAGtgacttttttgtgtgaacATTTGTTACTCTATTGTTTGAATtggtttaaattaatttatttgcctCCCTCTACAGACTGCACTAAATTTGGAAGCTTTCCTGAATTATCATTTAcagtttgatttattatttattttgtgtgtaaatgtttatttgtgttacAATCTCCATTttgttgtgtgtatgtatattggtaaaaatatgtatttagtgCCTATTTATGAGCAGTCACTACTGATTGTACTAAgcacatatacattttctttcttttatttttttgtggaaaaagtgGATCTTTAATGCTCTGTTTAGCTCTACAGTTCCAACTTTGTTTTTGTATCTGCTCTGTATTTTTCtgatatgaataaatgtttatatgttcataaatgtatatgaaaGTCCAAAAACAATTAGTATAACTTCAGTCAGCAGTAATCAGTGTCCAAACACATCGAGAAGGGGAAgaaatattagttttcaaatTTAGTAGAAcacaaaatagttaaaatatagTTCTGGTTTTCTCTGCTAAACAACTGAGTTAAGACGTAACTAGTGCTTCCTGTTGGTGGTCTGTTTcctcattttttgaaaataaaggtCTTCAATGCTTACATTTATACATCTTTATTAACCATCTACTctaccatctttttttttttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108676 lncRNA downstream 137518 53936 ~ 68473 (-) True G73453
XR_006251884.1 lncRNA upstream 55143 265490 ~ 266417 (-) True LOC122352556
TU108765 lncRNA upstream 55144 265491 ~ 266409 (-) False LOC122352556
TU108769 lncRNA upstream 74662 285009 ~ 285222 (-) True G73515
TU108763 lncRNA upstream 80819 291166 ~ 292261 (-) True G73510
TU108783 lncRNA upstream 118930 329277 ~ 329901 (-) True G73518
XM_043250888.1 mRNA downstream 3283 197792 ~ 202708 (-) True LOC122353055
XM_043250954.1 mRNA downstream 114670 87741 ~ 91321 (-) True LOC122353100
XM_043250913.1 mRNA upstream 525 210872 ~ 226209 (-) True slc27a6
XM_043250914.1 mRNA upstream 525 210872 ~ 226202 (-) False slc27a6
XM_043250437.1 mRNA upstream 82845 293192 ~ 332004 (-) False slc12a2
XM_043250435.1 mRNA upstream 82845 293192 ~ 332004 (-) True slc12a2
XM_043249954.1 mRNA upstream 132442 342789 ~ 348073 (-) True LOC122352523
TU108681 other downstream 114695 40690 ~ 91296 (-) False LOC122353100
XR_006251919.1 other upstream 153330 363677 ~ 396619 (-) False megf10
TU109011 other upstream 483101 693448 ~ 695778 (-) False G73662
TU109012 other upstream 483101 693448 ~ 766346 (-) False G73662
TU109014 other upstream 483101 693448 ~ 695778 (-) True G73662
TU109045 other upstream 579076 789423 ~ 793724 (-) True G73687

Expression Profile