RNA id: XM_043250890.1


Basic Information

Item Value
RNA id XM_043250890.1
length 1619
RNA type mRNA
GC content 0.46
exon number 11
gene id si:ch73-261i21.5
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11731123 ~ 11744558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAAACGTGTTGCGTGATTCGATACCAGAGCATCATGTGGCCAGCCCTCCTAGTGTGTCAGCTCGTCCTGATTCTCCAATCAGAGGCTCAGGGTCCCTGCCTCACCCACCCAACATTCAGAGACCCAGCCAACTCTGATATCACAGTTGTGTGTGGCACAAACAGCATGGAGCTTCAGATTTTGCTGTGCCCCCTGTACTTCTATGGCTATAATGAATCCATGGCGGCTCTTAATAGTCAGTTTGGTAAACCCGAGTGCAAAGGAATCGCTGACTGGACTGTCGACCCACCTATAATAAAATTCCAGTTCTACATCACTGAACCATACATATCCGACTGTGCCAATAAGCTGACGATCACTGAGGAGATCGGATCTGGGCTGTTCTCCGATTTCTCTAGCGTGCAGTCTGTGAACATCTCTGGGGTGGTCACTACTCAGGACCCGAATGCTGGAACCATCACCTACCGGCAGGAAATGAAATACCTCTTTTCCTGTAGATACCCACTGCAGTACTTGGTCAACAACACAgagatgagtgtATCTGGAGTGAGTCTGGCAATTAAGGACAATAACGGTAGTTTCGTCAGCACCCTAAGCATGGTTCTTTTCGAGGACTACACATATACAACTCGTCTTTTCATACCTCCAACGGGTCTCATGCTGAAGACCAGGGTTTTTGTGGAAGTCCGAGCCACTAATCTCACAGAAAGgTTCAATGTTCTGTTGGATCGATGCTATACAACCACCAGTCCTTACCCAGGAAACAGCACATCATTTGACTTGTTTGTCGGATGCAACCTTGATCCACAAACCATAATGGGTGTGAATGGAGAACAGCAGGTGGCACACTTCTCGTTTGAGACTTTTCgctttgtggaacacaaaaacagGATAGTGTCGACCTTTTATCTACACTGCGCCACCAGGCTCTGCGAGACCTCTTTCTGTAGGTCTTTACGGCAGAACTGCACAACGTCCGCAAGGAAGCGGAGGGCCGTCCAATCAGATCAGGGAACCTCAGTGAGTGACGTTGCCACGGTGAGCTCTGGGGCAATCATCACCAGAGTGGATGAACCATTAGGACCTGTTGCCACAGTGTCTAAAAATCCGAAGCAGGACGAGGCAGTGGTGGGCATCTCTGTGGCAGCGGGGGTGTTCGGAGGCCTGTGTGTCGTCATGCTGGCTGTGCTTATCTACAGGATCCGCAGGGACAAGTTCAATGCAGACAAATCAAACCTTTTTCACTGACAGCTCTCAGGGATCGATGTGAAATCCGTAACAAGGGCTACTACCTCTCAAAGTTTAGAGGTCATCCCGTTCCTGTCGAGGAACAACAAAATGTcttgaaacctttttttaaatagacgtGCGCCTTACAGTAAAACAAAGTAAATTCAGTAATGAATGAATTAGATTCATAATCTTTTTGCATGCCAGTGTTCATTGATTTAAACTATACTCCATTTATATATGTGCAATTTTGGGTTTTCTGTAAGAGGGCATTCTtgtataaaagatttttttgttaatgttgtaATTTCATGAATGATTAAAGCAAACCTaggaaatattaatttatggcTGCAAACACTAGCCTTAATTTAAGATTTGTGCTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113507 lncRNA downstream 146163 11505310 ~ 11584960 (-) False ccdc83
TU113502 lncRNA downstream 244695 11485906 ~ 11486428 (-) True G76693
TU113433 lncRNA downstream 440283 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA downstream 495433 11234372 ~ 11235690 (-) True G76662
TU113412 lncRNA downstream 620288 11096963 ~ 11110835 (-) True G76642
TU113585 lncRNA upstream 17159 11761717 ~ 11766210 (-) False G76755
TU113586 lncRNA upstream 17159 11761717 ~ 11766210 (-) False G76755
TU113587 lncRNA upstream 17159 11761717 ~ 11766210 (-) True G76755
TU113588 lncRNA upstream 17159 11761717 ~ 11766210 (-) False G76755
XR_006251968.1 lncRNA upstream 703984 12448542 ~ 12453651 (-) True LOC122353234
XM_043250759.1 mRNA downstream 11478 11713900 ~ 11719645 (-) True vps11
XM_043249836.1 mRNA downstream 19525 11709431 ~ 11711598 (-) True ift46
XM_043250948.1 mRNA downstream 198118 11530837 ~ 11533005 (-) True tmem126a
XM_043250947.1 mRNA downstream 198637 11530837 ~ 11532486 (-) False tmem126a
XM_043250114.1 mRNA downstream 220659 11506201 ~ 11510464 (-) True ccdc83
XM_043250357.1 mRNA upstream 2649 11747207 ~ 11748057 (-) True LOC122352762
XM_043250354.1 mRNA upstream 5407 11749965 ~ 11754201 (-) True zpr1
XM_043250865.1 mRNA upstream 36938 11781496 ~ 11784153 (-) True bsx
XM_043250981.1 mRNA upstream 41852 11786410 ~ 11787673 (-) True lim2.1
XM_043249820.1 mRNA upstream 321373 12065931 ~ 12186096 (-) False opcml
XR_006251915.1 other downstream 523871 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 525896 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 525897 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 525897 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 525897 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1037795 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 1794171 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 1898733 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2061561 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2457704 14202262 ~ 14204127 (-) True G77440

Expression Profile