RNA id: XM_043250893.1


Basic Information

Item Value
RNA id XM_043250893.1
length 1367
RNA type mRNA
GC content 0.45
exon number 6
gene id hvcn1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 613874 ~ 616743 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCACTTCCTTCGAGCTGCATCCTGTGCAGAGGATCACGTTCAGATCTGGAGGAGAGGCGGAGTTTAGGGTCAAAGTTTTCACAGAATTCGGATAGCTGCTCCCAAAAGCCGAGACCGCTTGCCTCCAGAGACACGGCTTCCTCCACAGAACAGCGCTCGGCTCATGTGACCCCGGGGAAAAATGTCCCGTTTTCTGAGGCATTTCACGGCGGTGGGTGATCAGCAGAACAGCGCGTCTCCGTGGCACGACGAGGAGCCGCACGACGCCAGTGAAGACCTGGAGCTGGCCACCGGACCACACCTGGGGCAGGTCAGCTTCAGGGACTCGCTCCGCCGCCTCTACAGCACTGAGAGGTTCCAGATCGTCGTTGTTTGCTTGGTCGTCTTGGATGCCATTTTCGTTCTGTGCGAGCTGCTGATCGACTTGTCTATCATTCAAGCAGATCATCACAGAATCGCTCCGCAGGTATTCCACTATCTCAGCCTCGCCCTTCTCACCTTCTTCATGGTGGAGCTGTCTGGAAAGATTTACGCCTATGGATTAGAATTCCTCCACCATAAGTTTGAGGTGTTTGACGGCATCGTGGTGGTGGTGTCTTTCATCCTGGACATTGTGTATATCTCGAAGGAAGATGCATTTGATGCCATGGGGCTTCTGATCTTGCTCCGGTTGTGGAGAGTGGCCAGGATCATAAATGGGATCATAGTGTCTGTGAAAAATCGTGCCCATCACAAGGTTCAGAAAGTGAAGGAGATTAATGAAAAACTTGTTCATCAAGTCAACGAACTTCAAGAGCGGAACACAAAAATGGATCAAGAAATCGCGAGGCTTTGTGCAATCCTGAAACAGAACGGCGTTGAATTCTGACGCTCGGCGCTACTCGTTAAACACATCACAACATGAGGCTGAGTTTAAGATCGATCTCGTCTGTTCATTGCCTATGAAATGTGAAGAAGGTCATGTTACGTTGTGATGTGTTTATTCCCCGGCAGATATATAACAGAACACATAAAGGAGAGGCTTTTTAAAGCCAGTGACTCATGTAGGTCAAATTATACAAAAAGGGAAATCTATAAACTCCCCGGGTTATATGTACTGGAATATTAAACTTGCCTCAAtagatgattgattgatttttattctGAATCACTATTTTCCAAAATCACtatcagtgttgttgttttatcaatgaagggtatatttaatgttttcttgtaaaatgtgaATGTGTTCGAGCAACTGGAAGCTATGCGATAAATATCATTTTGTATAGATATGAAATATTAAGAGCAACATATCCGTCTGTCCGATGAACTGGTTTAATAAAAGTAGTAGTACTTCACTACTAgttaaaaaaagtgaa

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K22644 HVCN1, HV1; voltage-gated hydrogen channel 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108837 lncRNA upstream 184604 428856 ~ 429270 (+) True G73560
TU108834 lncRNA upstream 186359 424953 ~ 427515 (+) True G73559
TU108811 lncRNA upstream 215018 397730 ~ 398856 (+) False c10h5orf63
TU108786 lncRNA upstream 216773 349308 ~ 397101 (+) False G73519
TU108886 lncRNA downstream 35801 652544 ~ 653003 (+) True G73589
TU108885 lncRNA downstream 36871 653614 ~ 673309 (+) True G73588
TU108988 lncRNA downstream 66424 683167 ~ 774374 (+) False pmaip1
TU109003 lncRNA downstream 178592 795335 ~ 795689 (+) True G73656
TU109004 lncRNA downstream 179403 796146 ~ 796408 (+) False fstb
XM_043250971.1 mRNA upstream 49720 536408 ~ 564154 (+) True mtrex
XM_043250440.1 mRNA upstream 98238 507604 ~ 515636 (+) True pstpip2
XM_043250441.1 mRNA upstream 98238 507604 ~ 515636 (+) False pstpip2
XM_043249978.1 mRNA upstream 107754 504360 ~ 506120 (+) True sub1a
XM_043250898.1 mRNA upstream 193420 412893 ~ 420454 (+) True aldh7a1
XM_043249977.1 mRNA downstream 6529 623272 ~ 633992 (+) True pptc7b
XM_043249975.1 mRNA downstream 20927 637670 ~ 649638 (+) True tbc1d10ab
XM_043251168.1 mRNA downstream 47208 663951 ~ 665777 (+) True aplnrb
XM_043251169.1 mRNA downstream 57865 674608 ~ 680564 (+) True LOC122353206
XM_043250018.1 mRNA downstream 66363 683106 ~ 684241 (+) True pmaip1
TU108810 other upstream 215018 398268 ~ 398856 (+) False c10h5orf63
TU108992 other downstream 76457 693200 ~ 695923 (+) True isl1b
TU109131 other downstream 317326 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1494453 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1577354 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1972402 2589145 ~ 2705339 (+) False cntfr

Expression Profile