RNA id: XM_043250916.1


Basic Information

Item Value
RNA id XM_043250916.1
length 3439
RNA type mRNA
GC content 0.49
exon number 18
gene id paxbp1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9290851 ~ 9302634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACGGAGGGACATAAACGTTTCCGCCAAAGGCAAAATGGTGGACTTGTTATGTTCATCGGTGCCCtgcaaaaatctgaaaatcGGTCTGTACGTGTTCTCCTAGAGGCGTCGCATACTACATCACCATGTTTAAGAAAGCAAAGAGGTGCAATTTCAGACGGAGGAACGACTCTGAAGatgaggagaaagaggaggacCAGCACTCCGGCGGGCCCGGGGCTGAGGACTCGGCGGTCCCGAGCGAGTCCTCCACCGCCACCGCCGGCCCCGTTCCTGCAGCGAACGCGCTGAACAACCACGGAAACGGGTTTCAGCCCGGTGCCGTCAGGTTCaacaaagagaagaagagaaagaacgAGAACCGAGAAGAACCGAAAGCGAGTCTGCTGAGCTTCCACGACGACGAAGATGAGACAGAAGTGTTCCGTGTGAAGAAATCCAACCACAGCAAGAAGATCGTCAAGCAGCTGAAGAAAGAATACAAAGAGGATTTGGAAAAGACACACGATCACACACGCATTGGTGGACCTGCTCAGATTCTGTCGATTAAAGAGGAGGCCTTGGAGGGCAGCAGAGCCAGCAGTGAACAGGGAGAAGAAGAAATGGAGGTGGACAGCAATGAGGAACAGGAGGAGGACGGCGAGCAAAGGCCTGCGGGTGGAGCTTTTAGCCAAACTCTGTCGGCTCTCAGCTCGCTCAGACCGGGTGAGATCCCCGATGCGGCCTTCATTCATGCCGCTCGTAAACGTAGGCAGATGGCTCGAGAGCTCGGGGGTGAAGCTCCGCTGGTGGAGAACGAGGCTACGAACAAGCGCCTCACTCGCGAAGATGAGAACGGCGGCAGTGACGATGAAGATGAGAAGAGAATCGTCTTCAGTGGAGTCAAGATGAAGAGTCAGAGGCAGAAAATAGCAGAGGAGATCGGTATTGAATGCAGTGATGATGAAGCTCTAGATAATGGACAGGATGAGGAAGTGAGTCGCTGGGAGCAGGAGCAGATCAGGAAGGGCATTAGCATCCCACAGGTCCAGACCACCCAATCTGAGGACCCAACTATGTATTACCAAGGCAGTTATGATACACAGCCATATGGAGCGTCCTACGCCATGCCCTTTAGCTACACTGCCACAGTCGGCGCAGACAACAGCAAGACTTTGAAAGCAGAGCCCACAGTTCCCAGTTATCCCATTCCCTCTTGTGACCTGACCCCTATAACCACAGATCTGGTAAAGAAACGTCTCAAAGACAGGCTGAGCTTCATGCGCCATGGGCGTGATTCCAATGCCCGGCGCTTTGAGCAGATCCAGGAGGAGCTGGAGGCCTCCAAAAAGACCATCCAGCTCCTGGAGGGCTCCTCACAGGAGGCCGCAGACAAATATAGATTCTTGCAAGAAATGCGAGGGTATGTTGGAGACTTGCTTGAGTGTTTCAGTGAAAAGGTGCCTGCTATTCTGGAGCTAGAGGTCGCCATACACCAGTTACTTCGGCAGCGGGCGTCCCGTCTCGTCCAGAGAAGACAGGATGATATTAAAGATGAATCGTCGGAGTTTTCCAGCCTTTCAAgtaaGGCTGTTATGGCCCCTAACTTGGATTCATTCGGTAGAGATCGCACAGCCTATCAGGAACTGGCCAAGCAGAGGAGGATAGCTGAAAGAGAAGCCAGACGaacTCGTCGCAGACAAGCTCGAGAGCAGAATGGCAAGAGAGCAGAGCATAAGGAGGGGCTGTCCAGTGACGATGAAGAGACGTCCACTGACATCACCAGCTTCAACTTAGAAAAAGAACGCATTTTAATAGAGTCAAAGAAGGTTTTTGAGGATGTTATGGAGGATTTCCACTCACTGGACAACATAAAGTCACATTTTGAGACCTGGAGAAAGTTGTATTTTACTTGCTATCGAGACGCCTACATCGGGCTGTGTCTGCCCAAACTCTTCAACCCTCTAATTCGACTACAGCTCATCTCATGGTCTCCGCTGGAGGTGGAGTGTCCTAACTTTGAGTACATGCTGTGGTTTGAGTCTTTGCTCTTCTATGGCTGTGAAGAGCAGAGCGCCCTAAAGAAAGAGGAAGACATAGATAACAGCCTGCTTCCTGCTATTGTCGAAAGAGTGCTGCTTCCGAAGCTAGCAGTGCTGACGGATCAGGTGTGGGATCCGCTCTCCAGCAGTCAGACATTCAGACTGGTGACTTTCATGCAGAGGCTGATTAAAGACTATCCCACTGTGATGCACGGCGACAACCGCAACACACAAGAGCTTCTGAGGACCATAGTCATGCGAATTCGACGAACTCTTGATGATGACATTTTCTTGCCTCTGTTTCCAAAAAACATAATGGAGAACAAGAACTCTGGTCCTTACCTCTTTTCTCAGAGACAGTTTTGGTCTTGTGTGAAGTTACTTGGGAATATCTTAATCTGGGATGGGATCCTGTCTCCTTCGGTGCTGAAGGAGCTTGCGGTGGACAGCACGTTAAACCGCTACATTCTCTCAGCCCTGCAGACCACAGACGTCAGCGAGGAACATGTGGAGAAATGCCGCAGGGTGGTGGAGTGTTTTCCTGTGCAGTGGTTCAGCAGTCTGAAAGGACAGCAGACTCTTGCTCAGCTGGAGAACTTCTGCAGATATTTGAAACACCTGGCAAGCAGTCTTTATCGTGGCTGCGTGGCTGGATCAGACGTGGAGAAGAGAAACGTGAGGGAACACATAAAAGAAGTGGTTAGGCTTCTTGGACGGCTCAATGCTTTAGACCACGTGATCACGGTTGCGTCAGAACACGGCATTAAAGATATAAAGACTCTCCTGGAGAACAAATGAAAGCGTTTTTGGATGTACCTCACCTTGTAAATACTGTGAATATTGTACATTTACTTCTGCAGCTGAAGGGTTTCTTTTGGGGACACAGTGGAACCTTCACTACAGTTGAAATCCAGTGGAAGTGGGGTTGAAGTGCACTCTGCTGCCGTGTTAAGACTTTTGTAATCCCTTTCCTGAGGAGAGGTcacttctttttacttttttttttttgttcgttttttaaTGGATGGATTCTcttaatgcatcttttaaacTGTCCGTGACTCCGCAGTGTCGTTATCTACAAGAAAAGACCACTTTGAAACTCACGCATGGGTTCTGTGCTCTTTCCCTTCCACAAAGACTGCACTAAAGCTGATCTCTGAGAGCAGGTTACATGCTGCTTATTGTAATagttcaaaaaaatatttatgcacaGCCATGGGTTGAATGATCCAGCATCTGTGTCCATCTTAAAAAACAGAGTCGCTCATGTGCCAACCTCATCCCTAATCAAATGAACATGACATGCTGGCAAACAAAACCTCGTGCTACAGTAACgaatgtacttatttttgttgttgtttttctggaacttgaaatgttttatttgcttaaataaaGTGTTGTTAATATTCA

Function

GO: NA

KEGG:

id description
K13211 GCFC; GC-rich sequence DNA-binding factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112468 lncRNA upstream 7203 9277433 ~ 9283648 (+) True LOC122353086
XR_006251959.1 lncRNA upstream 10042 9277564 ~ 9280809 (+) False LOC122353086
TU112466 lncRNA upstream 17562 9266815 ~ 9273289 (+) True G75984
TU112452 lncRNA upstream 37370 9245998 ~ 9253481 (+) True G75974
TU112404 lncRNA upstream 578653 8708754 ~ 8712198 (+) True G75934
TU112489 lncRNA downstream 46538 9349172 ~ 9396047 (+) False LOC122353220
TU112687 lncRNA downstream 410193 9712827 ~ 9713108 (+) True G76150
TU112705 lncRNA downstream 460372 9763006 ~ 9766783 (+) True G76162
TU112735 lncRNA downstream 520330 9822964 ~ 9824196 (+) True G76182
TU112737 lncRNA downstream 522283 9824917 ~ 9825970 (+) True G76184
XM_043249832.1 mRNA upstream 83516 9076866 ~ 9207335 (+) True gbe1a
XM_043249831.1 mRNA upstream 205192 9070840 ~ 9085659 (+) True LOC122352417
XM_043250660.1 mRNA upstream 709723 8580009 ~ 8581128 (+) True LOC122352912
XM_043250651.1 mRNA upstream 808863 8475593 ~ 8481988 (+) True sftpba
XM_043250626.1 mRNA upstream 863921 8420336 ~ 8426930 (+) True ggcx
XM_043250342.1 mRNA downstream 1002 9303636 ~ 9323880 (+) True slc7a1a
XM_043250343.1 mRNA downstream 1004 9303638 ~ 9323880 (+) False slc7a1a
XM_043251085.1 mRNA downstream 23190 9325824 ~ 9389728 (+) False mtus2a
XM_043251084.1 mRNA downstream 24161 9326795 ~ 9389728 (+) True mtus2a
XM_043251086.1 mRNA downstream 24161 9326795 ~ 9389728 (+) False mtus2a
TU112450 other upstream 138232 9149791 ~ 9152619 (+) False gbe1a
TU112407 other upstream 555855 8733779 ~ 8734996 (+) True G75937
TU112405 other upstream 574574 8713203 ~ 8716277 (+) True G75935
TU112216 other upstream 709749 8580299 ~ 8581102 (+) False LOC122352912
TU112127 other upstream 1187927 8101476 ~ 8102924 (+) True G75750
TU112684 other downstream 389572 9692206 ~ 9699748 (+) False map3k7cl
TU113296 other downstream 1836278 11138912 ~ 11146033 (+) False LOC122352518
TU113543 other downstream 2420128 11722762 ~ 11724767 (+) False hyou1
TU113542 other downstream 2422614 11725248 ~ 11726005 (+) False hyou1
TU113655 other downstream 2981745 12284379 ~ 12285541 (+) False tmem218

Expression Profile