RNA id: XM_043250920.1


Basic Information

Item Value
RNA id XM_043250920.1
length 5249
RNA type mRNA
GC content 0.42
exon number 12
gene id pdzph1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3891642 ~ 3904123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agtGTTAGTTAATGGATGATGTCATCTGAAATAACAGTAAACAATgctttacagcatttattcatctatgttaatttctataataattaaacattttcagctTTGTAGTTTGAATGAATGAGCTATAGTTTGGATTGATTCACTGCTTCGTGAGTTTATGAATtaacaagaatactttttattattaattactactaatagttattcattcatttattattgaaCAAGAACACAGAAGATGAAATTGCCCATTGTTTCTATGATTTAGTGTACAGGACTGTAGAATGAGTCGGAGGAAGAGGAACAGTCGCAGGAGACGGAGTTCCAGCAGCAGTAAACAATGCATCTCTCCATATAATTTTCAAAGATACACTATGGTGGACACTGTGGAAGTTGCAGAGAAGGGAGAAACTGACTCTTTCTGTAAAGAGCATGAACTGTCAGTATCTGAAGATGAGAAGGAGACTGAGACACCAACCACAGACAAAGATAATGGACTTGAGAGTTGCGAAGATTTCTTCcaggacaaaaagaaaaatgacgGACAAAAGCCAAACTCAGAACCAGTAGATAGAGGTCCAGGGTTAAAAATCACACATTCTGTGACCATCGAACATTTTGGATTGTCTTCTCCGAGAGTTGTGTTTGAACGGTGCCACAAAGCAATGGTTAGCAGTGTGATAGCCGTCACAACCACTGAGATCAAGTGTGTGAGCCCAAATATGAAGCTTGAGATCAATGAATTCGTGACATCAGACGATTCGAATTTCAAGACAACCTTTATAATTGAAAACCACAGAGATGAAAGAGATGAGACTCATTTTACAACTGAAAAGCATCAAActccaaaaaacacacatgtcTATTCATGGAATCAACATGGAGCAgattacaaacaaaacatcagTGAGAATATCAGATACAAGGTTAGCATTGCAGAGCTGAATTCAGAGTCATCATCGGACGAACCCGAAGAAACTGCTTGCCGTAAAAGCTGCTGTAAAAACAACTACCGATGGGGAAGCACAGGTGGCCAAACGGACACAGATTTCACACTGGTTGATGGATCCTCCTGTTGTTCATCACCCTCTGATTTTTGGCAACAATCGAAACAGCGCTCACTGCCCAGCAGTCTCAGTAATGAGACATTGTGGGATATCCCTCCCCCTGACGAATTTGCTGATGAGAAGAGTAATGCACTGGATTTTCTTGCAGAAAATGTTGCATCTTGTCAGATCAGTTCAAGAGAAAGATTTGTTGACCACAACAACACTAATTGCACACAAACAGCATCGGATGTCAACTTGTGCAAAGAGTTCATGCGCCAGGATACGTTGGACAACAGGACAAATGAACCCCGGTGTGAATCCTCGAGTACTCACGAACATTTATTCATGAACCCAAGAGCTTCAATAAACAGATCTTCTTTCACTAAAAACTTCATCGACAATCACGAAAGGAAGACGCGCATGCGCAACAACAGCATCGCCACCCTAGAAAGCAAAACTCATCCTGCAGGCTACTTGGAAATTCCTCCCAAAAGACGAAAAACGTACCCGGGACTGACATATCAAATGAGTCAAGCCAGAGAAAGCATTCCCTCATACAGAGAATCGTTTTCTTCTGGTACACTGTCGTCATTTTTCATGCAGTCGCTTCCCTGTCAGGCAGAGAGGATGGGCAGATTTTACGTAGAAGATGAAAGACTTTGTCCAAATGGGAGCCGCAAATCTTCCAGTAGCAGCAGCTATAGACCAAGCTCCAGCTCCACAACTGGTCCCGACTCTTATATTCCCAAATTTAAAGCTTACAGCTTAACAAAGAACCCCTTCTATCCATCAAGGTCTGATGAGAGCCCAGAAGAAGTCTTCTTTAGAGGCGAACAATATCATGGGCCAGCAGAGCTGGATGAGATGGAGCAACCGAGCTCTGGTTTGATGCTCCTTGATGGTGCAGATCAAGATGGTGCACCTGAGCTGAATGAAGTCAATGAAAGTGGCTTTGATGAAGAGATGGTGGAGTTGGATGGGTCTATTTCTCCAGGTGACACCATGGAGAGACATCAAAGGGAGCTTCTTATTCATGTGATTCCACCTTCCCTGTGCAACTCTGAGGAACAAATTGATGAAGGATTACCCAACGGTGTCAAGCATAACATGTCTGATGGAGACAAAGTTGATGCTCCAAAGAAAAGAAGAGGTTCGGTAATGACAATAATTACTGGCGACTGTGAGCAGAGATTTCTGCAAGGCAACCATGTCTTCTCATTTGATGAGGTGCGTCAGAAAGATGCGTTGAGCCCTGTGAGTGAGTCTCCTAGTGCGTCTCCAGCCAGCATCACAGAAGTGGCGGAGGAGCTCCAGGATTCCTCACAGGCACGAAAAACCACAGTCTCTTCAAACAGTAAGCTAATCTTACATATGGACACATCCTCTCAAGAGCCTGGAGAAGTGCAACCAAATGATCCCCTGCGTAAAATAAGCACAGATGTCAATAGGACAAACaaactttataaaaatgacttgtcTGATCGGCAAACTGCCTCAAAAAATTCATTAGAGGTCAAAGAGCACCTCAGGCCTCCAACAGACTCCATTCATAAGGATTCAGAGGAGCATTCAGATCACTGGGCAAGGAGACGCAAGCTTTTCAAGGAAAGCAAACAACGCAGTTCTGCAGGAGGAAGTTCTATTACTAGCAATATCACAGAGGAATCAGACACATTGAACTCTGAGGACACTCGTTCAGTGGACATGTCAATGCGGGATATTGAGGACAGAGGATTTTACACAGAAACCTTTCACTCAGTATCATGGATATACCATGGAGATGAAGTTAACCAGAATGAACGTCTCAGTAGCTGTACTCGACCAGCAGCAATTCGTGAGCGGACGGTAAAAATCAGCAAAGGGATGGGCGAGTATCCCTGGGGATTCAGGATTCAGTTCTCCAAACCCATTGTGGTTACTGAGGTGGACACAAATGGAGCGGCGGAGGAGGCAGGCCTGCAGGTTGGAGACTATGTGCTGGCAGTAAATGGCACTGACGTCACTATGGTGCCACACTCAGAAGCAGCTGACCTTGCACGGCAAGGCCCAGACATTTTGACTCTGACTATTGGCTCGGATATCGGACGAATGCCGAACACTCCTCGACCAGCGTGCAGAGGTTACTTGCACAAGAGAACTCAGTCCAGTTTGCTGAAGGGCTGGAGAAAGAGGTGGTTTGTGCTCAGACACGACTGCTGCCTCTATTACTACAGAAACAAGCGCGATGAAGGGAAGAGCCGAGCTCTGTCTGTGGTGAGTCTGGAGGGGGCGCTTGTGGAGGCCGATAGCAGTTTAGGAAAGCCGTTTGTGTTCAGATGCCACCCTGTGTCTGGGAACCGAGTTTACTACTTGTGTGCCACATCAAACCAAGAGATGAAGAGGTGGCTGGAGGCTATGGGTAGAGCAGTTCATCCTATTACACAGAATCACGTGTGGGTGGATGTGACTCGGCACAACTCAAACCTGCCCCCTCTGGCAGTCAAGAACCCAGAATGCCTTGGGTTACTGCACCAGCTGGACAGAAGCAAGGACTCGTGGGTGCAGCATTACTGTGTGCTTAAAGACGGATGCCTATATTTCTACGCCAGCATTCGCTCAACCTGTGCAATAGGAGGAATCTACCTGCATGGCTACACAGTGAGGGACCAGCCAGTGGGATCCAGAAGATCTGCCATTGAGCTCAGACCTCCTTCTGAAGAGTTTAAAGTGTTCTTTCTCTGTGCAGAAAATGCAAACGAGAACAAACGATGGATTAGCGCAATAAAATCATCTACATCAAAATGGCTGCCATTGCATCAGGCAATTCAGGACTACATGAGTCGCCCATCAGAGGAAACAAGAATGTGACTACAGGCACAACCATGTGTTCAAACCATAGCGTGACGATCTCctaattttttcttaaaattagGTCTGTGAATTTCCAGTCATTGTGCGCGATAACAACTTAAGTTACCTAACTGTAACTTAGAGTTTATTAGAAGACTTCAGGCTAGTTTAATCATGACAGGTTAGTAGCTTGGGTCTTGGTGGACTACAAGAGCATCACTTCGTCCTCAAAAGTGACCAGGTTGATGATGGTGAAGCTCTTATGCCTAAATGGCTCTAATGCATAGCCTTACAGACGCATGACGCCAAATTAGCATTGTGTGCAATATCAGGAAGTTTAGCTGTACAGTGCTAAAACAAATCAGatcttttctgttttgatgtTGAACCGATCTTGCGTTTGGCTTTGACGTGCATTTGCTTATTTaccaaaaactaaacaaaaaattgaTAATCGAGAGGTGTGGATACAAACAAAGCTAACAATTTAACAAATTGAAATTACAATGATCAAATCGTCTAGTGTAAATATTCATAATGAAAcctaaaataagtaataataataatttccaaGTGCTTTTTTGACAGTGCAGCAGTATCAAGTGCATGAAGTTGTCATGGCAACCTGTGCAGTGAAGGCAGCTGGAAGCATAGAAATATAGGTAGAAACCTCAGAGTCAcatcaaactcttttttttaaattctctcagtctttcattttaaattatgcttaTTTTAGGTCCACTTAACCATTCTGATGTTGCATGTTTCTTTGCATTCAGACGAGAGGTTAAGAAAGAAATACATCTGTGAATACATCTGCTAATTATGTAAAGACACTGCCATTATTATTGCATATAGCAcacattttctttaaggccaGTTCTTTCAGACCTTTAGTCCTCTTAAAATAGGATGCAGTGAAGTATTTAAATTCTTGTTTTAGCTCAATTTATAGCATTATTATGACTTCTTTGTATAACTAATgacacatttatgtttttttttgtattaatatttgtattagtaTGGATGTTCTTCCAGTTTACAgtttataagatttttttacaaCCTACAGTGAGGGAACATTTATACTTGgtcacttcatttatttgaattcattacATTAATCGTTCATTTATGTGGGCTGAACAGCAGATTCATTACACTTGGCTGAAATGCACTTCAGATTGCATTCACCTAATGACTGAATAACTATCTGACCTGTAAAACACAGGTAGTGACCAAGTGTAAATATCCTCTAATGATTTCCCTAGAATTGGATGTAGTCTGTTCATTTAAGTGCTTGTATTGCATGTAAATAGCCAATGAAGCTTGCCAAAATACAGACTTGCATTATGTTCTACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110414 lncRNA downstream 57272 3780059 ~ 3834370 (-) True G74614
TU110415 lncRNA downstream 59550 3831602 ~ 3832092 (-) True G74615
TU110425 lncRNA downstream 63614 3827125 ~ 3828028 (-) True G74624
TU110406 lncRNA downstream 67046 3821391 ~ 3824596 (-) True G74609
TU110345 lncRNA downstream 190873 3699605 ~ 3700769 (-) True G74574
TU110585 lncRNA upstream 88064 3992187 ~ 3993434 (-) True G74739
TU110588 lncRNA upstream 93778 3997901 ~ 3999787 (-) True G74742
TU110583 lncRNA upstream 103107 4007230 ~ 4009374 (-) True G74737
TU110643 lncRNA upstream 177453 4081576 ~ 4530616 (-) False G74769
TU110644 lncRNA upstream 177453 4081576 ~ 4532236 (-) False G74769
XM_043250199.1 mRNA downstream 12122 3843692 ~ 3879520 (-) True pam
XM_043250200.1 mRNA downstream 15088 3843692 ~ 3876554 (-) False pam
XM_043250198.1 mRNA downstream 15088 3843692 ~ 3876554 (-) False pam
XM_043250282.1 mRNA downstream 227761 3644069 ~ 3663881 (-) True sec31a
XM_043250481.1 mRNA downstream 265859 3617515 ~ 3625783 (-) False tmem150c
XM_043250328.1 mRNA upstream 1491 3905614 ~ 3912742 (-) True LOC122352741
XM_043250416.1 mRNA upstream 201885 4106008 ~ 4115776 (-) True ca9
XM_043250417.1 mRNA upstream 215255 4119378 ~ 4126532 (-) True dcp2
XM_043250373.1 mRNA upstream 227619 4131742 ~ 4153288 (-) True chd1
XM_043250428.1 mRNA upstream 251281 4155404 ~ 4164114 (-) True macir
XR_006251926.1 other downstream 283854 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 551713 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1694331 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2403634 1484374 ~ 1488008 (-) False nrarpa
TU109556 other downstream 2403727 1484374 ~ 1487915 (-) False nrarpa
XR_006251921.1 other upstream 1491 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1491 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 2634411 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2724302 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2724307 6628430 ~ 6631157 (-) False sprn2

Expression Profile