RNA id: XR_006251960.1


Basic Information

Item Value
RNA id XR_006251960.1
length 2511
RNA type transcript
GC content 0.47
exon number 7
gene id cabp1b
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16030527 ~ 16057307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cACGTTTCCTCTCTATTACGTTGTTTGATTTTAATGATGCAAACTGAGCATTCTCAGCATTTGCTGTCAATGTCTTTTTTCCCGTCACTTTCACCTGCGCACAAGTCACGTCATACCGTCATTAACATTTTGACGTCCTTTTATTCTTCAATGGTTTCTCAAGGCAGTTTGACGTAACTTtcatccagagagagagagagagagagagagagagagagagagagagagagagcgagcgagcgagagagattCACTTGTTAATGCTGAATTTTGGTGGCAGCGCGCGCTCAATGGGGTCACGAGGGACCGAACAAACTCCGCGCGAGCGACCTGTGCGATGCTCTCGCGCTCTATAAAGTCCTTCACTCAGCGTTCACCGGAGAGATTCCCACCTGCCCGACGACACGTTTACACATTCCTCCTTTATAACTGAGATTCCCGACTCAACTTGAGTCTGTGGGGGGGTCAAAATGAGCTCCTCGCTTCCAAAAAGCGAATCTACCACGTCCCTGATCAAAACCAACCGGAGAGTCCGCGCGGACCCCGCGAGCCACCGCAACGGGCACCGGCACGCGGGAGGCGGAGGAGGAGACTCGTGCTGGACCGATGAGTGCGATGCCACCGCCAGGAGACCCCTGTGCCAACCGAAACACGGACGAAAAGCGGACAAGGTCCAGAATCCCCGCGGTCAGGATGGATATTATCAGGAGGAAGGACCGGAACACCGCAAGCCCTCGCGGCACCACCACACCGCTGACCCTCCGGTACAACTCCACGGGAATCCCCGCACCAGCCGAACGCCCTCGCCGACTTCATCCCTGTCCAAGCGCTCGGAGGAAGCCGCGCTGTTCTTTGAAACGAAGGACAAGCGTCAAAGCGTCACCTCCAGTCCACCTCCAGCGCTTCAGCCCAGCAGCACCCGCGCCCCCGGGAGAGCGAGCGCGTACAGCGGCGCGCTTGATGCAGACCTCCATCCCATAGTCAAATCAGTCTTTGGACAGAACAGAGAGCTGAGACCAGAGGAACTGGATGAGCTACGAGAAGCCTTCAAAGAGTTTGATAAAGATAAAGATGGATTCATTGGCTGCAAAGACCTGGGCAACTGCATGAGAACCATGGGATACATGCCCACTGAGATGGAGCTCATCGAACTGAGTCAGCAGATCAACATGAACTTGGGGGGACACGTAGACTTCGAGGATTTTGTGGAGTTGATGGGCCCCAAACTTCTGGCTGAGACTGCAGATATGATTGGAGTAAAGGAACTGAGAGACGCTTTCAAAGAGGTGAgTTCGACACCAACGGAGACGGTCAGATCAGCACAGCAGAACTAAGAGAGGCCATGAAGAAACTGCTGGGCCAGCAGGTGGGTCACAGAGATCTGGAGGACATTCTGCGGGACATCGATTTAAACGGAGACGGGCACGTGGACTTTGAAGAATTTGTGAGAATGATGTCCCGCTAGAGGAAAGGCGGACAAACTATGTCATAAACTGGATCTCCTGTGCTCCGGCACAGACAGAGGCGGATGGAGGAGAGGAAAGATCAGGAGGAAACGGGAGCAGCCTCGCAAGAGGAACTTCTGAaacatgacctctgacctcaaaGCACATAAGAACTGCACTGTAACCCTCCATAACAGCTTTCACGAAGCCCAGAAGCCAACAGCGAGAACGAGAGGACGACTCCAATGCTAATACTGTGATctactgaaatatatttgtgtaacaGGGTTTTTTTACCCAATATAAAGCCTGCAAAGGgtctgatgcaaaaaaaaaaaaaaaacccagatgagcaaccaatcaaaacagcaactgtattaaaaaaattcactaTTTTAATTTACCGGCATCTCACACCTACTTTGTTACAGTAGGGAGCATCAGataaattgcaataacattGCCGTTTCATATTTAagctatttattaatatttgtaaaatatagaaAGATGAGTGTGTATAGTTTCCCTTTAAAAGACTCTGGCTGTTTTACAGTAGCCTACGATAGATTATTACtctcaaagattttattttatatatcaatgTACTGGGAAATGCTGGAAACTTTGCTATCAATCATTTGCTATTATTGTACAATACATCGGACCTATGCACTACTGTATGCGtggacatatttttaaaaacatagagAAAGATTTgccataaaaacaacaacattcaaTTGCCCTCGTTTGCACACCGTCTTGCATGAACGCTAGTGCTGATACAATCGAGTCAACACAGCCGAGTAGCCTACACTTGTGTAGTTCTgtcatgtattttaatgttgtaagTTTAGTTAACAGTCCAACAAGCATCTTTGACCTTAATACACTATTTGAGACGTACTCTGTGTGAGCGaatgcgagagagagagagagagtttgggTTGAATTTCTTGTATCTTATGTGCGTGAATTCAAGTTTGTCTAACCTGAGTTATTCTATGCATGCCAAAACAACTTTTTGTAGAGtgtagatttcattaaaaagttgTGCAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115092 lncRNA downstream 43040 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 98876 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 102210 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 103029 15927186 ~ 15927498 (-) True G77830
TU115104 lncRNA downstream 109167 15920921 ~ 15921360 (-) True G77827
XR_006251962.1 lncRNA upstream 41688 16098995 ~ 16101344 (-) True LOC122353141
TU115278 lncRNA upstream 115171 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 121293 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 132227 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 132227 16189534 ~ 16193540 (-) True LOC122352611
XM_043250688.1 mRNA downstream 1387 16021077 ~ 16029140 (-) True gpat4
XM_043250694.1 mRNA downstream 8753 16016676 ~ 16021774 (-) False LOC122352931
XM_043250693.1 mRNA downstream 8753 16016676 ~ 16021774 (-) False LOC122352931
XM_043250692.1 mRNA downstream 8753 16016676 ~ 16021774 (-) False LOC122352931
XM_043250691.1 mRNA downstream 8753 16016676 ~ 16021774 (-) False LOC122352931
XM_043250855.1 mRNA upstream 24663 16081970 ~ 16095356 (-) True ggt1b
XM_043249898.1 mRNA upstream 89129 16146436 ~ 16169814 (-) True LOC122352490
XM_043249899.1 mRNA upstream 89129 16146436 ~ 16165581 (-) False LOC122352490
XM_043249902.1 mRNA upstream 116444 16173751 ~ 16177111 (-) False morn3
XM_043250444.1 mRNA upstream 126547 16183854 ~ 16187960 (-) True rhof
TU115119 other downstream 12757 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 133429 15893683 ~ 15897098 (-) False npffr1l1
TU114910 other downstream 672295 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 740855 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 922775 15107137 ~ 15107752 (-) True G77671
unassigned_transcript_1473 other upstream 61479 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 61645 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile