RNA id: XM_043250984.1


Basic Information

Item Value
RNA id XM_043250984.1
length 5940
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC122353116
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7163272 ~ 7196404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTTTGATTCGAGTCAAGCTAAAGCTGTTgcttcttttaattaattttgcagAACTGAATTGCATTGACTTTTTCATCGTTGCTATGATTAAGTCACAGCAAAAGACAAGTAGGCCTATAAATAAACGGTGTTagaaaaaatgcaatgaaatgcgCTTCATGAATAACAAAGACAATATCATAGTTTTAAAGTGATGTTATTCTATAACAGccttcagcaccatggacaatGAACATTTGGTCCTTGCTTTTCTTTCAgtacattttgttcatttcgATCAGACGtagaatactttttattttgttcgaTTGCTGcagtatgcattttattttaaacaaaaactgggGATATATACAAACGAAAGCGTGACGATTGCGTTCATGCTTTAGAATTAATCAGTTCTATTCTTTTAAAGCCTAAATGTATACTATGGAAAATTGCAGTTGAAATAAAACTGCTTCTATAGTCATGCAGTTGAATCGCGCGATGTCGCTGCAGACCGCGACTTTGAAGCACTGCTTTTATTAAAACGAGGCTCCTCCCTTACAGTGGAAGAGCAACCGCGCATTACGGTCATGTGGAAATAAGATATCATACAGGCTTCACATGCTAGTGCCCTGGCAGCGGCGAGACAAAAAAATCTTCGTTTTAAACGGATTGATATCTGAGGCTTCGAAGAAACAGTTATGGATAGCTTAAGATATTTGTGCGTCATGACGGCTCTGCATTTGTGTTTATGGCGATCATCATGCAGCAAGATTATCTACTCGGTCTCGGAGGAAGTAAATAAGGGAACTGTTGTCGGAAATATAGCAAAGGATCTCAAGATCAGCGTTCAGGAGCTGGAATCGCGTATCTTGCAGCTTGTGTCTGGATCCAACAGGAAATATTTTGATGTGAATTTAAAAACCGGAGCGTTGTTTGTGAATGAAAGAATTGACCGGGAGGAGTTATGCTTCGCTCTTCAGCAGTGTGCTCTTAATTTGGAGGCTGTCGTTCAAAATCCTCATAGCCTTTATCGAATTGAAATTAACCTTCTGGATGTTAATGATAATGCTCCGTATTTTTTGGACAGCGTTATAACGATAAACATTGCAGAAGATGTTGTTCCAGGGGAGAGATTTAATCTTCCCGTGGCTGAAGATAACGACATAGGCGTTAACGCACTGAAAGACTACAAATTGGGCAAGAATGAATACTTTTCTATTGACGTACAATCTGAAGAGCAGAGCGTGTCTGCTGAATTAGTGCTCCAAAAACCTTTAGATCGTGAAAAACAATCAGTAATCCCTCTTGTACTGACAGCTGTTGATGGAGGAAAACCTGCAAAAACAGGAACATTAAGTGTAATTGTGAATGTAATTGATATAAACGACAACAAGCCTGTCTTCAGCAAGTCTTTGTACAAGATCAAGGTGAGAGAGAATGTTTCTGTTGGTACAAAAATTATGTCTTTGACTGCTACGGATCTGGACGAGGGCACCAACAGtgacattatttactcaataGCTGAACATGGAAACGTAAAAAAGCAAAGTCTGTTTAATGTGGTTCCTGAAACGGGGGACATTGTTGTGAAGGGTCAAATAGACTATGAGATGAATACTGCAATCGAACTGCGTGTTCAGGCGAGAGATAAAGGCAGTCCACCAAAAAGCACACAATGTAAAGTTTTAATAGAAGTTATTGATGAAAATGATAATGCACCAGAGATAATTGTTACTCCTCTGCTGGAAAGTGTGAAAGAAGACACAAAGTCAGGAACAGCAGTTGCTTTAGTCACAGTGTCTGATAAAGATGGAGGTAAAAATGGCATTGTACACTGCTCTCTGAaagactcttttcctttcaaactGGAGACATCATATAACAATCATTATTCTCTAGTGGTGGATGGACCTCTGGACAGAGAGAGTGTTTCTCTGTATAACATCACAATTACAGCTGCAGATGAAGGAAGTCCGTCTCTTTCCAGCAGCACTGTTATAACTGTACATATCTCTGATGTTAATGACAATGCTCCACATTTCCCAGCTCCCGTTATTAACGCTTTTCTACGTGAGAACGGTCAAGCTGGAGGTCTGGTGACAAAAGTGTCCGCTGATGATTCAGACGCTGGTGAAAATGCACAACTTTCATATTCACTGTTAGACAGTTCCAGCTCCAGTGTTCCTGTAATAACACTGATAAATATAAACTCTTTAAGTGGAGAAATATTCAGCTTGCAGTCATTTAATCACGAAGAAACAAAGAGGTTTCAGTTTCAAGTTATGGCCACAGACTCTGGTGTTCCTCCTCTGAGCAGCAACTcgactgtaaatgtgtttattctgGACGAGAACGACAGCAGTCCGGTTATTTTAGCTCCTTATTCTGAACCTGGAtcagttaatagtgagaacatTCCCTACTCTGCTGAAGCGGGATACTTTGTAGCCAAGATCAGATCTGTTGATGCTGACTCTGGATATAACGCACTTCTGTCTTATCATCTAACTGAACCCAAAGGAACCAATCTGTTCCGCATCGGAAGCAGTTCTGGAGAAATAAGGACTAAGAGACGAATGAGTGACAACGACTTAAAAACTCACCCACTTCTCATCACAGTGTCTGATAATGGAGAGCCATCACTCTCAGCGACTATGTCCATGGATGTTGTGGTTGTTGAGAGTCTGGATGACATAAAGACATCATTCCGAGAAGTTCCTGTTAAAGAGGAGAGTTTTTCAGATCTCAATCTGTATCTGCTCGTCTCTATCGTCTCAGTATCAGTCATCTTTTTACTGAGTCTGGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACAGCAGTTTCAGCAGGTACAGCGCTCCAGTGATCAGCACACATCCAGACGGAAGCTGGTCCTTCTCTAAATCCACTCAACAGTACGACGTGTGTTTTAGTTCAGACACGATAAAGAGTGATGTAGTCGTGTTTCCTTCAACCTTTCCTCTGCCAGATGCAGAACTAATCAGCATTAATGAAGGAGACACTTTTAATATGACTCAAACACTTCCAAGCACTACCAAGCCCAAAGGACCGAATGCTGACTGGCGTTACTCTGCGTCGTTGAGGGCAGGAGTGCAGAGTTCCGTGCATATGGAGGAGGCATCAGCTGTGATGCAGGGAGCGCAAGGCATGCTAGTCCAGAACTGGCCGACGGTCTCCAGTGCAGCAGACGGGGAGGGAGAGGGACAGCTGTCTCCTCCTGTCGGAGCCGGGATCAACAGTAACAGCTGGAGCTTCCGCTACGGTGCAGGCCCCGGCTACGGCCCTCCACAAGCCCTGAAGCCGGGAGAAATCCCACCTGAAGCCTTCATCATACCCGGCTCTCCTGCCATCATCTCCATCCGACAGGACCCGGGAGCCGTAGATGATAAGGGCGAGTTCATCACCTTTGgaaagaaagaggagaagaagaagaaaaagaagaagaaggaaaagaagGACAAGAAGGATAAGGGAAAAGATGATGGCGAGGAGTAACAAAGAACGTCCCACTACAATAATACAGCTATCAACTTATGTTTGTAGCGAGCgctgacagaaagagaaaaccaaaaatactgaaaatgtaaatagagGAGAAATTCCTTCTGTATACCTTACTTACCAATTCCAGTTGAAGAAAGAAGAGAGTTTGTGCCGCACGCGCAAACataaaaaatcacaaattaacCCTGTGAACCTGTGACTCCCGATTGGCTATTTTTCTAGTTCCGGCTATGAAATTAATCAGCGATGGTCAAGAAAGAACTCCAAGCTGCAAAATGCAAACCAAGCCCGCCCGCACCttgtaaatgacattttcaaccACGACGAGGGAAGTCCCTCTCCTCTTTAAAAAGGATCACGCGAATCCAGTTAAACTGGAAATGAACTCATGCAATGCCAAGAGTTTTCTCTAACTCCATCCCTGCCTTCCTCCCTCAACGTCAGATGGGGAAGAAACAGCCACCCCCTGGCCCCCGTCTCACTCCTTGATCTGCTGGAAACAAAactttgtaaaagaaaaaaaaaaggcactaCCACTTTACCAGAAAGCGCGGTGTCTGATTTCTAGGGCAgatcaaaaaataaacacctgCAGAGATGGGAATGTAGCAGCGAAATCACTTGCTTTTCACTCACAAAAAATGTCCTAGAACGGGGCGCAGAGATCTCTAACGCTTCCGTCCTGCTCCCAAAGTAATGCAGAATGATGCTTCACGCACTATATTTTCTAAGAGCAAGTAAATCTCACCTTATACGGTCCAAAAAAATCATGCACGCCCATGATttgtacaaatacaaatgacCAATCGATGTGCATTCTTGCTCTCTAATGCATAGCGCGCTACGAACAGGCTGTCCACATGCTGTACACTTAAAATCACCACAGGACTGAAGCACAACAGCCTCTCAAAAGTCTGTAAAATAGTAGAACGGATGCTTGTGGCTTCATCTCAAAACACACCCATTTcctttgctgctgttttgaatgtTTGATAGATGTCATCCCACTTCCTGCCAGCTTTATGTCTTAGTCCGGCTACTGCTTGTAACTTTAGCATATCTGATGTTGCCAACCTCCCTTTATCTGCTGTGCATTGCTGGCCCCATGTCAGTACTGCCCCCTGGTGGCTTGTATCGTACGACGTGACAAGAAAGAGCAGAAAAATTAAGTTGATATAACTGTCACTTCTTCTGCTGGAAACATAAGCACAGGTACTGgcccctacacacacacacacacacacacacaagacacaccAGTGTTTATGCTCTCACAGCAGTTGAACCACCATGGACTATGCAGCCATGATTATGGGCATGTTTAACTACAGCATATGGTGCTTTCTAGGGCAAAAATAGAAGTTGAGTGGAGATTAGACTGAAAATACCACAATGGTGGGCAGTACAGAGTTTTTTCTACTGTATATAATCAGTGATGAGATATAGCTTCATGACCGTTCCATAGTTGTTGATtcaaattttgtaaataatgggAATGTTTTCTTAACATCCAGACGTCATGcttaaattttatgtttttaagagGGAGCGCATCTCTCTGTTCTTTCCCTGTAGAGATACCGTTCAGTAAAGGAGAGATGTTCGTGCTGCTATGAGACCGTATCATCAcaaagcacacatacacacacacacacacacacacacactcacttgaGTCTCTTTCAGGTGTGGTTCAGTGCTGTCAGATCACCAAGTGACTGTTTTGCATGTTAAACgcaattaaaacagaaattatatatagatataaatgaacagatatgtttttcataattattttttctcatttatgaTAACCGGAGATGTGTATCGTCTCTGCTGAAGTATGTAGACATGAATCCAATAAttcatacacaaacatacactgattacacacacgcatagagcttaaaaaaaaagacagaaacgaTGTCGGCTCTGTGACGATCaacattaacataaacattCTAGCTATATGTGACGCTGTAGTGTTTTGGTCTAAATTGCTTTTCTTTACAACCTTATGATTTTTTTGCAACTTGAAAGGATCAATCCTTCGTTTTGTGCTAGGCTTTGAAATCAATAACACTGTAATGTGAGCCAGTTCATTCTACCCTATGATATAAACCTCtccctctaaaaaaaaaaattataaaataaaaaaataaaaaaataaaaataaaaaaaagataaaacaggaaataaaaaggTATATGTATTCTGCTTGTGTGTAGTAATTATATATCAATTCATCCAGTGCCTAAGTGGCACTATGCTTTTGACTTTGACAGTGCGAATCTGTTGGACAAAATTTTTGTACACCTGCTCATCAGTGTAAtggtgtttattattttatattactttatgaAATCTggtaatgtgttttgtttataaatcacaaataaagTTTTCTTTCATAAGTA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 170064 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 177375 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 403627 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 507362 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 512867 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 169013 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 201641 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 203024 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 205729 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 291071 7487475 ~ 7488567 (+) True G75502
XM_043249829.1 mRNA upstream 49 7160846 ~ 7163223 (+) True LOC122352414
XM_043251037.1 mRNA upstream 10811 7149532 ~ 7152461 (+) True LOC122353121
XM_043251043.1 mRNA upstream 18123 7142303 ~ 7145149 (+) True LOC122353129
XM_043251046.1 mRNA upstream 22726 7138473 ~ 7140546 (+) True LOC122353133
XM_043249828.1 mRNA upstream 25846 7134474 ~ 7137426 (+) True LOC122352413
XM_043251017.1 mRNA downstream 1133 7197537 ~ 7340195 (+) False LOC122353118
XM_043251035.1 mRNA downstream 1134 7197538 ~ 7340195 (+) False LOC122353118
XM_043250997.1 mRNA downstream 4042 7200446 ~ 7340195 (+) False LOC122353118
XM_043251023.1 mRNA downstream 4043 7200447 ~ 7340195 (+) False LOC122353118
XM_043251039.1 mRNA downstream 7753 7204157 ~ 7207530 (+) True LOC122353123
TU111651 other upstream 2009 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 2009 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 12691 7142293 ~ 7150581 (+) True G75422
TU111380 other upstream 691165 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 1073685 6061191 ~ 6089587 (+) True lrrtm4l1
TU111639 other downstream 12131 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 46863 7243267 ~ 7257229 (+) False LOC122353118
TU111766 other downstream 164580 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 664842 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 665189 7861593 ~ 7861674 (+) True trnas-gcu_13

Expression Profile