RNA id: XM_043251039.1


Basic Information

Item Value
RNA id XM_043251039.1
length 3374
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC122353123
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7204157 ~ 7207530 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAACTGGAAGTGTCTATAAGTTTGACAAGAATCGTCACCGTGAGTCCGGTATTTATTCTACTTGGACGTTAAAACTTACGAAAAAATGGTTGAcgtgctgaataaaataataagcgtaactttcttttaaaaccGATTTACTCTTTTGTTCAATAGGAATCGAAATTTACGTTACAATGGTCTGGTTGAATATCTCTGAGCTCATCCCGTTTCAGCACCACGAACCCGGACAGCGCCAGGACTGTCTGTTGTTCTTCATCTCTGAATGTGTggcagtttttaatttatttttatctgaacTTATATTGATGTAAATCGATGCGTTGACCAACATCACACTTCGAATGATTAATCCTCTGtcttttcaataaatgcattaatgatgCAATGAGCCCAAAAAAACTCACAGAGTCGCTGTTCACCAAGACAGCTGTGTCTCTCCTCCCACACTTAATGTATGCAGCATGAGATCTGTCTGTAAGAATATCCGCACAAAATGGAGTAAGCGTCCGTCGAGGCTGAGATAGCTTAGAAAATCCTCCGTTCAGCAGACATTTACTGTTGATGATTGAAAGATTAAACCTTTAACAATGGAACACGGATTATTTTCAGCTCCTTTTTTAACGTGTTTCGCTGCTCTTATTCTCTTTGCTCTGAGAACCGTCTGCGATGATTTGAGCTACAATATTCCGGAAGAAACGAAGCGCCAGTATGTGATTGGAAATATAGCGAAGGATCTGAGGATGGAAGTGAAGCAATTATCTGCTCGTAAAGCTCGGATAGAAACAGAGGACAGCAGCAAACGGTACTGTGATATTAATCTGAATTCTGGTGATTTAATCGTGACAGAGACAATAGATCGAGAGGAGCTTTGTGGATCACAAATTCCCTGCATTCTCAGTTATGAGCTCGTCCTGGAAAACCCTCTTGAAGTGCATCGTATAATTCTTCAAATTCAAGATATAAATGACAATACACCGCGATTTGCAAATGAGTATATAAAAATTGAAATCAGAGAATCAGCAATTAAAGGTCAGCGATTTCGTTTAGATGAGGCGCATGACACTGATATTGGACAAAATGCCATTAACAgctattcactgcagagaaatagacattttgttttaaatgttcacGATAGTGCAGATGGAGGGAAATACGCTGAACTCGTGTTGGAAAAGGAGTTGGATCGCGAGCAGCAGAAGGAGATAGATATGATACTCACAGCCACTGATGGTGGTTCACCGCAGAGGTCTGGCACTGCTGTCATACACATCACTGTTCTCGATGCTAATGATAATGTCCCGGTGTTTAGTGAGTCTGTTTATAAAGTCACTCTGGCTGAAAATACACCTTCAGGAACAGAAATAATCAGAGTGAGTGCAACTGATGCTGATGAAGGTCCAAACGGGGAAGTGACCTATGAATTTAGTAGAATGTCAGATAAAACtgctaaattattttctattaataaggAATCAGGGCAGATTGTTGTGATCGGAGAACTTGAttatgaaaaagacaaaaagtatGAAATGGGAATTCAAGCTAAAGATGCATCTGGATTGGCATCAACTGCTAAAATGATGATAGATATAACTGATGTTAATGATAATCCACCTAGAATCATCCTGAAATCTTTGAATAATCCAGTATCTGAAAACTCTGATCCAGGTACTGAGGTGGGAATCATTAATGTTCAGGACAAAGATTCAGGAGAAAATCGTCAGATTCGTTGTTCTGTTCAGCAAAATGTTCCTTTCAAACTGAACCCATCTGTTAAAAACTATTTCTCTCTGGTAACTACAAAAGCTCTAGACCGAGAGAAAGAATCTGATTATAACATTACCATCACAGCCACAGATGGGGGATCTCCACCATTATCCACCTCCAtgacaattcatttatttgtctcAGACGTGAATGACAATCCTCCTGTATTTGAGCAGCAGTCCTACAGTGCTTATATAAGTGAAAATAACAAACCAGGCACTTCTGTTTGTTCTGTCAGTGCAAATGACCCAGACTGGAGACAGAACGGGACTGTACTGTATTCTCTGGTTCCCAGTGAAGTCAATGGGGTCCCGGTGTCCTCCTTTCTATCTATTAATGGAGATACAGGGGTGATTCACGGTGTGAGATCATTTGATTATGAACAGTTCAGAAACTTGACTGTCAAAGTCGTTGCCAGAGACAATGGATCTCCAGCGCTCAGCAGTAACGTGACTGTCAAAGTCTTCATAACAGATGAGAACGATAACTCTCCACAGATATTATACCCTGTTCCTGATGGAAAGTCTCTAATGACTGAAATGGTCCCTAAAGCGactctctctggctctctggTGTCCAAGGTGATCGCTGTAGATGCTGACTCTGGACAGAATGCATGGCTGTCCTATCAGATTGTCAAATCTCCTGATCCTGGACTTTTCTCCATTGGTCTTCATAGTGGAGAGATCAAAACACAGCGAGACATTTCTGAATCTGACAATATGAAGCAGAACCTCGTTATTTCAGTGAAGGATAACGGACAGCCCTCTCTGTCTACAACCTGTGCTGTAAATCTACTGATTTCTGACAATCTTTCTGAAGTTCCTGAACTTAAAGATATGACTTATGAGGACAACTCTAAACTGACGTCTTACTTGATCATTGCATTAGTTTCTGTGTCCACCTTCTTCCTGACGTTCATCATACTGATCGTGGCAGTGAAGTTTTGTCACAGGAGAAAGCCCAGACTGTTGTTTGATGGAGCAGTAGCTGTTCCCAGCGCCTATCTTCCTCCTAACTATGCAGAGGTGGATGGAGCAGGAACTCTCCGCAGCTCTTACAATTATGACGCGTATCTAACCACAGGCTCGCGCACCAGTGACTTTAAGTTTGTGAACtcgtataatgaaaacacacttcCTGCCGGTGGGACTCTGAAAAAGGAGCACAATTTTCAGTTTGGCTCGAGCATGATAACACTTGACTTTACACAGAATGAAGATGAGGTAAGAGAGGTTTAACTCCTCTtcaatctttaaatattttttatttactggtGTCTTCTTGTCTAACGACGCTGGAGAGATATTTATGAAAACCTTAAACTCCGTTACACTTTTTCGTATTATATCGCTATCTATATTTCCCGGCTTTCATTTCAAGCTatctataaaacacaatacacacatcTAACGGTGTAAATTTAATCTACTATTGGTACTGCTTTGTAacgaaaataatatattttttattcatttttcttttagttaatgactaatttatttgtttattggaGTATCTCTCAGACGGGGAGCGGGGAGGGTGTTGATCCACGAAATCCACCGCCTTTATCACACGTCTATAGAGTCTATAGAGTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16496 PCDHGB; protocadherin gamma subfamily B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 210949 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 218260 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 444512 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 548247 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 553752 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 157887 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 190515 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 191898 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 194603 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 279945 7487475 ~ 7488567 (+) True G75502
XM_043250984.1 mRNA upstream 7753 7163272 ~ 7196404 (+) False LOC122353116
XM_043250983.1 mRNA upstream 7753 7166338 ~ 7196404 (+) True LOC122353116
XM_043250982.1 mRNA upstream 7753 7178029 ~ 7196404 (+) False LOC122353116
XM_043249829.1 mRNA upstream 40934 7160846 ~ 7163223 (+) True LOC122352414
XM_043251037.1 mRNA upstream 51696 7149532 ~ 7152461 (+) True LOC122353121
XM_043251000.1 mRNA downstream 1067 7208597 ~ 7340195 (+) False LOC122353118
XM_043251026.1 mRNA downstream 1257 7208787 ~ 7340195 (+) False LOC122353118
XM_043250998.1 mRNA downstream 5277 7212807 ~ 7340195 (+) False LOC122353118
XM_043251025.1 mRNA downstream 5284 7212814 ~ 7340195 (+) False LOC122353118
XM_043250999.1 mRNA downstream 17519 7225049 ~ 7340195 (+) False LOC122353118
TU111651 other upstream 42894 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 42894 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 53576 7142293 ~ 7150581 (+) True G75422
TU111380 other upstream 732050 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 1114570 6061191 ~ 6089587 (+) True lrrtm4l1
TU111639 other downstream 1005 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 35737 7243267 ~ 7257229 (+) False LOC122353118
TU111766 other downstream 153454 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 653716 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 654063 7861593 ~ 7861674 (+) True trnas-gcu_13

Expression Profile