RNA id: XM_043251041.1


Basic Information

Item Value
RNA id XM_043251041.1
length 3138
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122353126
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7289342 ~ 7292481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATCGCTCAGTACTGTCGAATGCCTTGAAACGAACGCGAGATTTCTACTTACTATGATTGAAGGAGCTTGAATTCACTCTTTTGCATTTACAAGGCGGCTCTTTGAAATCGTTGAGAACATTTTTGTCTGTGGTTTGTCGGTGATATCAAGGGAAAAAATGCCTGGAGTCGTGATGTGGCACTCGGTATTGTTTTTCTTCGTCCTGCTTTATTCGGCGCGAGGACAGGTCAGTTACTCCATTCCAGAAGAAATGGCTAAAGGCTCTACTGTGGGAAATATCGCGCAGGATTTGGGTTTGGATTTAAAAAGACTAAAGTCAGGAAAAGCGCGCATATATACAGGCGACAGTACTGAATATATCGGTCTCAATAAAGACACTGGCTTGCTGCTCATCAGAGAGAAAATGGATCGCGAGTCTCTTTGTGCAAAAACGACGCCGTGCGCTCTGCACCTTCAGATGATTTTGGACAACCCGATGGAATTATATACGATTACGGTAGAAATTACGGATATAAACGATAATCCACCCACTTTTCAGAAAAAGAGAATTGAGTTTGAGATCAGCGAATCTGCTGTAACGGGCGCGAGATTCTTGCTGGAGGGAGCTGTGGATGCTGATGTAGGAATAAATGATCTTCAGAGCTATTCTCTTAAACCTACTGATAATTTTATCCTTGAACTGCACAGTCAGTCAGACGGTGACAAAAACGTCGAAATGATTTTGCAAAGACCGCTGGATAGAGAAAAGAAAGGAGTGGTTACGTTATTGCTAACCGCTTTTGACGGCGGTGATCCGCAGTTATCTGGAACTGTTCAAATACATGTGACTGTGTTAGATGTTAATGATAATGCTCCTGTGTTTACGCAGAAAGCATATAAAGCTATTTTGACTGAAAATGCCGCGAAGGGGTTTAAACTTACCACTGTAAGTGCCACTGATGCGGACGAAGGACCGAATGGTCTTGTGACATACTACGTTGCAAGCAAAGATGATATTGTgcgaaatatgttttttgttgatCAGCATAGCGGCGAGGTTACTTTAAATGGCCTGGCTGACTTTGAAAAGGCAAGTCACTATCAGATTGACATCCAGGCTAAAGATCAAGGGGGGCTTTCTGATTCGTGTAAGTTAATTATTGATGTGCTAGACATTAATGATAACAAGCCAGTGATAAGTTTACTTTCTATGTCAAACTCTGTGTCTGAAGACTCCACACCTGGCACAGTTGTTGCTATGATGAAAGTAGATGATGCAGACTCAGGTGTGAACGGACAGATTCACTgcattataaaagaaaatattccaTTTGCTCTTACATCACCATCCAGTAATTTTATCAGCCTGCGTATAGAGCAGCAACTggatagagaaagagaagctGAATATAATATCAGTGTCACATGCTCTGATCAGGGGGTGCCTGCTCTCTCCAGCAGCGCTTTTCTGTCTTTACAAATATCAGATGTGAATGACAATGCTCCTGTCTTTGAGAAGAGTCACTATGAGGCGTCTGTGCTGGAGAATAACACACCTGGTCTCTCTATATTTACAGTTAAAGCCAGTGACTCTGATTGGAATCAGAATGCCCGTGTTTCTTATATTCTAGAAGACAGCTCTGTTAATGGAGTCTCTGTCTCATCATATGTGTCAGTTCATCCTGACAGTGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAACAGCTGAAGGATTTCCACTTCCGGGTAAAAGCACAAGATGGAGGCTCTCCTCCGCTCAGCAGTAACGTGACagtgaaaataattattcaagATCAGAACGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGTTCTTCTGTGGTGGCTGAGATTGTGCCTCGTGCTGCAGATGTTGGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGGTTTACAGAATGGAGAAGTAAGAACTGTGCGACAAGTGACTGATAAAGATGCCGTCAAACAAAAACTGACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTAGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACTCACGAAAAACAGTATAACGACAATTTGACGTTTTATTTAATCTTGGCTCTTGCAGTGGTCTCCCTGCTCTTCATAGTATCAATAATTTCCATAATTTCAGTCAAAATCTACAGATGGAGGCAgaataagatattttataaatctgGTGCAAATCTACCTGTAATCCCGTATTACCCTCCAGTCATGAGCGGCACATTACAGCACGTGTATAATTATGAAATGTGCGGGACTACTGATTCAAGGATGAGTGACATGAAGTTTGTCAGGCCTTACAGTCAGAACACACTGGTGAGCCAGAGTCGCATGGGAACAGTTCAGAGAGAAAAGAAGGAGCAGGAGGTCGATGACCTGACTTTAGAGGTGAGACCGTGACTGTTTTTTCTAATGGATTCAATATATTGGTGTACTTCTATGATATGTGTGTCAGACCTTGATACCAAGTCATAATTGTTGTCCTCTCTAGTTTAAATGCAGTTTCTATGTATAGATAGTCTAACAATTGTATACAATTTTGACTCATGGATCCAAGTATTTAGACATTtgtcacaattaaaaaattaactgTCTTATAAGGCAATATATCAAAACAACTTCACAAACACACCTCtcaatcaaacatttaaaatgttgttttttagttgtaaataaataacgaTCAGTCATCttaaaatgaaagacaaaatgtaatacaattgATTCTGTGAAGTATGCTAGCATACGTTTGCTTGGTTTACTTCATTGCTCAgacaaattttaaattaaaaagtatattttatgttgtataaatattaaattgtggTGTATCAAGTTATGCACATTTTGTcatgtaatatgcatttatttgctaaaaaggtgttttatgcatactttatatttttacacatagTCTTACAAGTTGTGTGCATATAGAACTGATTACTGTTTaggatatttaattgtaaaaagaataaatgtgtaaaattgtA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 296134 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 303445 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 529697 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 633432 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 638937 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 72936 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 105564 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 106947 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 109652 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 194994 7487475 ~ 7488567 (+) True G75502
XM_043251044.1 mRNA upstream 7710 7278859 ~ 7281632 (+) True LOC122353131
XM_043251045.1 mRNA upstream 11531 7275305 ~ 7277811 (+) True LOC122353132
XM_043251047.1 mRNA upstream 47287 7240323 ~ 7242055 (+) True LOC122353134
XM_043251039.1 mRNA upstream 81812 7204157 ~ 7207530 (+) True LOC122353123
XM_043250984.1 mRNA upstream 92938 7163272 ~ 7196404 (+) False LOC122353116
XM_043251040.1 mRNA downstream 131 7292612 ~ 7295200 (+) True LOC122353125
XM_043251007.1 mRNA downstream 3272 7295753 ~ 7340195 (+) False LOC122353118
XM_043251029.1 mRNA downstream 3273 7295754 ~ 7340195 (+) False LOC122353118
XM_043251038.1 mRNA downstream 13229 7305710 ~ 7308657 (+) True LOC122353122
XM_043250990.1 mRNA downstream 18459 7310940 ~ 7340195 (+) False LOC122353118
TU111640 other upstream 32113 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 67814 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 128079 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 128079 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 138761 7142293 ~ 7150581 (+) True G75422
TU111766 other downstream 68503 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 568765 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 569112 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 569479 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 571298 7863779 ~ 7863912 (+) True LOC122353466

Expression Profile