RNA id: XM_043251045.1


Basic Information

Item Value
RNA id XM_043251045.1
length 2503
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122353132
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7275305 ~ 7277811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATATTTTCTTGCAAGCAATGCGACGCTCTGTACCGACTCGGAATAAAGAACTTGAATTTCTACTTCCTCTATACAAAACATCACTTTGTAATCTTTGAAAACCTTATTTTTCTTCGGGGATATCAAGGGAGAAAATGCCTGGAGTCGTGATGTGGCAGTCGGTATTGTTTTTCTTCGTCCTGCTTTATTCGGCGCGAGGACAGGTCAGTTACTCCATTCCAGAAGAAATGGCTAAAGGCTCTACTGTGGGAAATATCGCGCAGGATTTGGGCTTGGATTTAAAAAGACTAAAGTCAGGAAAAGCGCGCATATATACAGGGGACAGTACTGAATATATCGGTCTCAATAAAGACACTGGCTTGCTGCTCATCAGAGAGAAAATGGATCGCGAGTCTCTTTGTGCAAAAACGACGCCGTGCGCTCTGCACCTTCAGCTGATTTTGGACAACCCGATGGAATTATATACTATTACGGTAGAAATTACGGATATAAACGATAATCCACCCACTTTTCAGAAAAAGAGAATTGAGTTTGAGATCAGCGAATCTGCTGTAACGGGCGCGAGATTTATGTTAGAGAGAGCTGTGGATGCTGATGTAGGAATTAACGGTTTACAAAGCTATTCTCTTAAACCTACTGATAATTTTATTCTTGAACTGCACAGTAAAGCAAGCGGAGATAAAAACGTCGAAATGATTTTGCAAAGACCGCTGGATAGAGAAAAGAAAGGAGTGGTTACGTTATTGCTAACCGCTTTTGACGGCGGTGATCCGCAGTTATCTGGAACTGTTCAAATACATGTGACTGTGTTAGATGTTAATGATAATGCTCCTGTGTTTACGCAGAAGGTATACAAGGCCATTTTGACTGAAAATGCACTGAAAGGGACTAAACTAACTACAGTTAGTGCCACTGATGCGGACGAGGGATCTAATGGTCATGTGACGTACTACATTGCAAGCACTGAAGAGACTgggcaaaatattttttttattgatcagCATAGTGGTGAGGTAACTTTAAATGGCCTCGTTGACTTTGAAAAAGCAAATCAGTACGAGCTTGATATTCAGGCTAAAGATCAAGGGGGGCTTTCTGATTCCTGTAAGCTTATTATTagtttgttggacattaatgaTAACAAGCCAGCGATAAGTTTACTTTCTATGTCAAACTCTGTGTCTGAAGACTCCACACCTGGCACAGTTGTTGCTATGATGAAAGTAGATGATGCAGACTCAGGTGTGAACGGACAgattaattgcattataaatgACAATATTCCATTTGCTCTTATTTCATCATCCAGCAATTTTATCAGCCTGCGTATAGAGCAGCAACTggatagagaaagagaagctGAATATAATATCAGTGTCACATGCTCTGATCAGGGGGTGCCTGCTCTTTCCAGCAGTGTCTCTCTCCGTGTGCAGATATCAGATGTGAATGACAATGCTCCTGTCTTTGAGAAAAGTCACTATGAGGCGTCTGTGCTGGAGAATAACACACCTGGTCtctttatatttacagttaaagCCAGTGACTCTGATTGGAATCAGAATGCCCGTGTTTCTTATATTCTAGAAGACAGCTCTGTTAATGGAGTCTCTGTCTCATCATATGTGTCAGTTCATCCTGACAGTGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAACAGCTGAAGGATTTCCACTTCCGGGTAAAAGCACAAGATGGAGGCTCTCCTCCGCTCAGCAGTAACGTGACagtgaaaataattattcaagATCAGAACGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGTTCTTCTGTGGTGGCTGAGATTGTGCCTCGTGCTGCAGATGTTGGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGgtttacagaatggagaaataagAACTGTGCGACAAGTGACTGATAAAGATGCCGTCAAACAAAAACTGACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTAGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACGCACGAAAAACAATTTGACGAGAACCTGACCTTTTATCTAGTTCTCGCACTGGCTGCTGTTTCCTTCTTATTTATCACTTGTGTGGTTGTCATAATATCAGTAAAGGTCTACAGATGGAGACACTCTCGCTTCATATCAGTCCAATCTGCCTGTTATTCCGTACTATCCACCGCATTACGCGGACACAGGAGTCACTGGAACTCTGCCGCACGGGTATAATTATGAAGTGTGCATGACGACTGACTCGAGGAAGAGTGACTGTAAGTTTTCTACACTCGGTGGGAAGAATGTTTTAGTCATGGACCCCACTTTTGCTGAAACAATGCAGCGCACAATCATGAAAAACGTTTCTAT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 282097 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 289408 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 515660 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 619395 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 624900 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 87606 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 120234 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 121617 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 124322 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 209664 7487475 ~ 7488567 (+) True G75502
XM_043251047.1 mRNA upstream 33250 7240323 ~ 7242055 (+) True LOC122353134
XM_043251039.1 mRNA upstream 67775 7204157 ~ 7207530 (+) True LOC122353123
XM_043250984.1 mRNA upstream 78901 7163272 ~ 7196404 (+) False LOC122353116
XM_043250983.1 mRNA upstream 78901 7166338 ~ 7196404 (+) True LOC122353116
XM_043250982.1 mRNA upstream 78901 7178029 ~ 7196404 (+) False LOC122353116
XM_043251044.1 mRNA downstream 1048 7278859 ~ 7281632 (+) True LOC122353131
XM_043251009.1 mRNA downstream 5143 7282954 ~ 7340195 (+) False LOC122353118
XM_043251031.1 mRNA downstream 5144 7282955 ~ 7340195 (+) False LOC122353118
XM_043251011.1 mRNA downstream 8224 7286035 ~ 7340195 (+) False LOC122353118
XM_043251033.1 mRNA downstream 8225 7286036 ~ 7340195 (+) False LOC122353118
TU111640 other upstream 18076 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 53777 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 114042 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 114042 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 124724 7142293 ~ 7150581 (+) True G75422
TU111766 other downstream 83173 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 583435 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 583782 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 584149 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 585968 7863779 ~ 7863912 (+) True LOC122353466

Expression Profile