RNA id: XM_043251067.1


Basic Information

Item Value
RNA id XM_043251067.1
length 2352
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC122353147
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13036034 ~ 13051363 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGAAGAGGGGATTGTATTTTACTCTAGTCAGGGACTGTCTCTCCTCACCCGTCAGGTCTCTCAATAACTCATTCAGGCGTTTAACACAACTCGTCTGAGCAGGATAACATCAGATAAAGCACAGGGAATAAGGGAAGAGCTGTTAGACGTCGGACCATGCTTGAGGGATTTTGGAAACTTCTttgtattttcatgttttccttGCGTGCTTTTAAAGCTTCAGCAGCTATTTATCAGGTTCCAGTGAGACTGCAGCGCACAGTGTCGGAACACAACACTGGAGCAAACACACTCAACAGGAACTGGTGCCAGTACACAGTACAGAAGACCGTTTCATGCCAGACACAAAATGGGACAGAGACTGTTGTGCAGCGACTGTTTCAGAGTTGCCGATGGCCTGGACCGTGTTCAAACCTCATCAGCTACAGAACTCTGGTGAGACCCGTGTACAGAGTGACCTACAGGAAAATCACTTCTCTGGAATGGCGATGCTGTCCAGGATTCCATGGAGAAGACTGCAGAGAGGAGTGCATGAACTGTACTGGTTATGCTGACATCAAAGAGCGCCTGAGTGTCATTGAAGCTCAGATAATGTTATTGAGAGATACTGAGGCACCCCCTCTCTCTCAGCCCAGCCCATCACCTGAGAGAACAGCTGATAATGAAGTGGACAGGACACACCCCTCACCAATAACACCCAATGCCATTGGCCGACCAGGACCAAAAGGGCAAGCAGGACCTGTTGGGCTGCCAGGTCCCCCTGGGCCTCCTGGACCTCCTGGACCTCTAGGAAAGATGGGGTTTTCTGGAAAGCCTGGCCCTACAGGACCTAGAGGACCTCACGGGCTGCGAGGCCCACCAGGTGAACAAGGCCTTCCTGGGCCACCTGGGCCCCCAGGGCCCTTCTCCATCAGGGGAGATGTTTTCACTCTAATGTCTAAACAACAAGCCCAGTATGAAGATAGTGACTTTGCTGCCTATCGTGACACGCAGGCTTTACTTGGTCCTCCTGGGCCCTCTGGCCCTCCTGGTCCACCAGGGCCTGCCGGACCACCTGGACACCCAGGTGCTCCAGGGAAAAATGCTGCCTCAAGCTTTTCAGGCACACCAGGTGACAGGGGACCCAAAGGAGATCCAGGAGAAAGAGGTCCACCTGGAATAACAGGAAGGCAAGGGCAACCTGGTGTTCCAGGTCCTAAAGGTGAGCCGGGAGAGACTCCATCAGAGGTGCAGCAGTTGAGGGAAGCGCTGAAGATCCTGGCCGAGAGGGTTCTCATCCTAGAACACATGATCGGCATTCATGATACTCTGTTGGACTCCGGCTCTGGAATAGATCTCCTGGCGGACTTCATGCTATCAGGCAGTGCTAAAAATGTTGCCTCTGCCAAACCCTCCTCTCCTCTTACATCAGACAGAGAGTAGCCGAACTGTATTGGGTATGGAGAGTAAATAACAATCACTTGTGACCACAAGGCCTTTATCCCCTGTCTGTTGCTTTCAAGGACAAATCCCTCAATGGATTTGTTTATGAGTATGATAAGAGAGGCACTgatcttttctattttatttacttttttaattttacttttatttgcattttgcaatCACTGTATTTAcctgtcaaaaatgtatttttattgccatTCACAACCTTTTTTTCTTCGACAGCGTGATATATTTCAAGGGCTGGCCTTTCATTTTAGTCATCAGGAAATGATCAGACATTTAAAAGTGGGTGTCACTCACCAGAAAGGAGTCGGACTGAATGTGAGTTCGCTAAAAAGATGGCTAACTAGCTATTTCTGTATTGGTTAGAAGTATTCAGTAGCATGTGAGGCATAGATGGtgtcaacataaaaaaagagtatGTTATAAAAATCTGGTTTTGTGTCTATTTACTgtagtttgtttcttttattatagtaatagtGAGGATTTTGGATGGGCAGGTTGCCTGGGTTAATTAATCAAAAAGACGATActtgattatataaaaaaacgcTTTCTTGACACTATTCGCTTCTTGATGGTTTTTATGTGGCATGAATAATGATTTAATACCGCAGTCattcaagctgaaaataaatgttttatcataaAGACATtccagaaaacaaaaaggccccatttttcttgtcatttgctttttgttttctgattGATGACCTATAATGACCTCAtgcacataattatatatagcaGCCTTAGCCGTGGCTTTGTATAAAAACAATTCTGTCTCAAAACTCACAGCAAGCAAAAAATAGACCAGAATACAACTTTAAAACCACATTCAACCCTTTGTCTGCGTAGAAAGTGTAACGTCTACCACAATAAATTGTGTTTACACCTC

Function

GO: NA

KEGG:

id description
K24358 COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114171 lncRNA downstream 449 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 155299 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 157381 12874551 ~ 12878653 (-) True G77135
TU113780 lncRNA downstream 356816 12679007 ~ 12679218 (-) False uvrag
TU113778 lncRNA downstream 357409 12678367 ~ 12678625 (-) True G76912
TU114230 lncRNA upstream 159253 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 261831 13313194 ~ 13315574 (-) True G77220
TU114273 lncRNA upstream 277279 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 434904 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 449440 13500803 ~ 13505849 (-) False dclk1a
XM_043250449.1 mRNA downstream 7224 12915183 ~ 13028810 (-) False cux1a
XM_043250447.1 mRNA downstream 7224 12915183 ~ 13028810 (-) True cux1a
XM_043250451.1 mRNA downstream 7225 12915183 ~ 13028809 (-) False cux1a
XM_043250450.1 mRNA downstream 7225 12915183 ~ 13028809 (-) False cux1a
XM_043250457.1 mRNA downstream 123502 12908571 ~ 12912532 (-) True kctd7
XM_043250779.1 mRNA upstream 751 13052114 ~ 13055376 (-) True bcl7ba
XM_043250777.1 mRNA upstream 4708 13056071 ~ 13060135 (-) True tbl2
XM_043249939.1 mRNA upstream 9349 13060712 ~ 13070717 (-) False prdm15
XM_043249938.1 mRNA upstream 9349 13060712 ~ 13070717 (-) False prdm15
XM_043249936.1 mRNA upstream 9349 13060712 ~ 13070717 (-) True prdm15
TU113815 other downstream 246944 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 1830808 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 487366 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 591928 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 754756 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1150899 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1150899 14202262 ~ 14202837 (-) False G77440

Expression Profile