RNA id: XM_043251081.1


Basic Information

Item Value
RNA id XM_043251081.1
length 4998
RNA type mRNA
GC content 0.44
exon number 17
gene id si:dkey-81j8.6
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6614030 ~ 6624214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGTGCTCTGAGGTGCACATAAAGAGCGACGCGACAATCAGAAGCATATTTGCCTTGGAGAGATTTAGACGGTTGccttttgcattgtttttagtttttttcgcTGGTTTTCTGATTGATGAATGAGACACCGAGGACCACGGGCTGACTGAAAAGGAGTTGGACTTCTCAAGGGGTTGGGGTGAATTTAAAGGGAGGGAGCCATGGCCTCCCTCCTGATGCGTATCTTTCGTTTGGGTGTCGAGAAGAAGCGGGTTCGGCACTACGAAAACCTGAAGAGGGATGTGGATCCACACCAGACGTGGGAGACTACGGGAGAACTTGGCGATGGAGCTTTTGGGAAGGTCTACAAGGCCCAGAATCAGACCACGGGGGTCCTGGCAGCTGTTAAAGTGATTGAAGTGCGCAGTGAAGAGCAGCTGGACGACTACATCACTGAAATAGACATCCTAGCATCCTGTCGCCATACAAACATCATCTCCTTACTGGACGCCATCTTCTTTGAGGCCTGGCTGTGGatCCTAATCGAGTACTGTCCTGGAGGCGCTCTGGATGATATCATGTTGGAACTGGAGCGTGGCCTCACGGAGCAGCAGATCAGTGAGGTTTGCTGTCAGTCTCTGCAGGCTCTGTCTTACCTTCACCAGCATCACATTATACACCGAGACCTGAAGGCGGGCAACATTCTGCTCACCATGGATGGACAAGTCAAACTAGCTGACTTTGGAGTGTCTGCAAAAAATGACAATACCCTCCAAAAACGCTCAACTTTCATTGGAACTCCATACTGgaTGGCACCTGAGGTGATAATGTGTGAAACGTCGAAGGACAATCCCTACACAACCAAAGCTGACATCTGGTCGTTGGGAATCACTTTAATTGAGGCCGCTGAGATGGAGCCTCCTCATCATACTCTCAACCCCATGAGGGTCTTGCTGAAGATTACCAAGTCTCCACCACCCACACTCTCCAATCCTCGCCAATGGTCATCGCATTTCCAAGATTTTCTACGAAGGACCTTGCAGAAGAACCCTGAGTCTCGTTGGGGAGCCCAACAGCTCATGGCCCACCCTTTTTCTTATGCAGGACGAGACGGACGAGCCCTTAAAGAACTCATCGCTGAGGCCAAAGCAGAGGTCACTGAGGTCATAGAGGCTGAGTCTTTGTTAGATCTGGATTGTCCTGCGAAGGAGATGATCTCTGCAGAGTCAGAGCAAACAGTGCCACAACCAGAACAAGCGGTTGAAGAACAAGTACCACAAGAACCCGAGACTCCTCAGAAAACTTCTGTTCCAGATGCTGTTCCTCAATCTCCCACCGACTCAGAGCCAATATCTGAGGTAAAAGTAACCCGCAGGGCTTCCCATGCCACAGACAAAGCTCAGAAGAGGGCAAGACGCCTCTCGGTTCCAGGAAATCTCCTCTCGTTTTTTACTGGAGGCTCCCGTCGCAAATCTGGATTCTGGGGTGACAATACACCTCTTCAAGGAAATAAAGACTCAGCTGTGGTAACTTGTCCTTCAGATGGCAAAGAAAGTGAAAGCACTGACAAACTGAAAGAGCAAACATCTGACTTAGTTGATGCTCCAAGTAATAAGGCTGCTGACACCAAAGACAAGGAAGCTAAAGTAGAAACTGACAAGGAGGTAGCCCCGACCTCAAACCACTCAAGCACTTCACCACAAACAGATTCCTCTGAAAAGGCAACACTAGATCATACCAAGGAGGACACTGATGCTGAAGAGAAAAAAGTGAAGTCTGATGATTCAGGAAATGATGACCAAACATTCTGGAAATCCCTCCAAACACCTGCAATTATCGACAAAGACACAGCACATCCACAGAGCACACCGATTGCAGCTTTGTGTTTGGAGACACCACTTGCTAAAAGGACTGAATGGAATGAgggaaattataaaaatgagtACCTTGATTTGGCCAGTCCTTTGAAAACTCGCGATTCTCCTCCCTCTTTAGATATAAACAAAATCTTAACTGTAGAGATGCCTTCTAATAGTGTTCCTGAAGAAGTTCCTGACCCCATAAAAGCACAACTGATAACCAAACCATCAGAAAATGATGCTGTTGAAGGTAGAACCGAAGAAGAACCAGGAGATCTGGAGACAGATGGCGGAATGGTGGATGCAACAAAAGAGGAAAGTAGTGAAAATGCCAATGTAATGACTGAAGAACATATAACCGGCAATGAAGATGACCTTACTATGAAGGTAGTGTGTGAAGATACCAGTGAAGTGGTCAGTGAAGAGCATGTCATTACTGAGATAGGTCATGAAGAAGTCAACGCTGGCACTGAAAAgtcagaggaagaggaaagtTGTGAAAAAATCCAAAATCATTGTACAgaaacagaggaagaggagcatTCAGATGCTGTTAACATAGAAGATGTTAACATAGAAGTTGAACATGATGATTTAGACTCAACAAACGAAAATGGTGAGAACACAAGAACATCTGATGAGGAGGTGGAAAAACCAACCCAAGATGAAATAACCACTGTTTCACAAATGGTAGAGATACCATGTCAAAATCAAGAAAACACCAGTGCTGAGGGAGAAATTATCATTATTGGTAATGAAAAAGATGCTGCTGGTGATCAAGGCAGAGCAAGTCCAACAGAAGTCTGttctgaaaagaaagaagatgggACAGATTCAGGAGAACCTGAACAAGAGCTTCACATGAATACCAACAGTGTACAGAACGTTACAGAAGAGCAATCAAAACTTCTTGGTGAAGATACAACAGATGTTTCTGGACCAAAGTTGAAAAAGCAAGTGATGTTTGCAATTCAAGAAGACAAAAATGAGCAAGAAAGGCCACTCGCAAATGGCTTGAAAAATTTAGACATAATAGAACTTCATGAATTTAATGGATCCACTCCTAAGGAATCTAATGAGGACATAAACGCACATCTTTCTCCTACCGAGCCTCCACTGTCTCCTGGAATTGAAGGGGAATTGCACCCAAGCAGGCGAACCATTAAAAAGACACGTACATTTATGGTGGATGGTCGTGAGGTCAGTGTCACCACTTCAAAAGTGGTCAACGAGGGTGACAAGAAGGAGCAACAAATGCGCTGCAACAGACGGCAGGAGCTGCATGCGTTGAAACTCTTGcagagagaagagcagagagAACATGCCCAGCTTGAGCAGAAACTACAGCAGCAGCGAGAACAGATGTTCCGCCACATAGAACAAGAGATGACTAGCAAGAAGCAGTACTATGACGGTGAGCTGGAGAGGCTCGAGAAACAGTACCAGCAGCAAAGCAGCCAGATGGAGTCTGAGCACACGTCCCGTCTCAGGGAGGATGCACGCAGACTCAAGGCCCAGCAGGAGAAAGAGCTCAGCCGCAAGAGCAGCACACTGAAAGCGGACCCTAAAGAGGAGCAGCGCTTCctgcagaagcagcagcaggagCTGAATGAAGCTCTGCAGAAGGGCGTTCAGGAACATAAGAGGAAGGCGGCGTCCATGGAGTGGGAGATTACAGTCAAATCTCAACAGCTCAAGCGAGCTCGTGAGGCAGTGATTTGGGAGCTAGAACAGCGCCACCTACAGGAAAAGTACCATCTATTCAAACAGCAGGTGAAGGAGCAGTACTCCCTACAAAGACAGCAGCTGACCAAGAGACACAACAAGGATAAGGAGAGAGCGTCTCGTTTCCAGCAAGCTCTACTGGAAGAGCAGAAGTCATTGCAGGCCCAAGAGCGAGTGTCCTTCCAGAAGGCCCAAAAAGCTGAAGCAAAGTCCTGTTTAAATCAGTTCAAGATGGAGCTCAGAAAGCAAGGTCTGATTGGTCCCGAGCAGCGACAACGTCTCACACAGTTTTTGTCAgaggaggaggccagacagaagCAAGAGAGACAGAGTCTTCAAGAAAGTCATGAAAATCAATTGAAAGCTGTGCAGGAACAGTGTGACGCCAGTGCGGCTGAACTACAGCAGCTTCAGAATGAGAAGCTTCAGATTCTTGTGGACATGGAGAAGAAAAAGATCAAAGCTCTGGAGGATGAACACACTCTGGAGCTCAACGAATGGAGAGATAAGCTCGCGTGTAGAAAAGAGGTGTTAGAAGAAGACCTTGCTCGCAGACGtagagaaaaagaaggaaacagGAGACGAAGCAGTGAGCCTGAAAACCGCCACGCAGCTCGCCGTTCAAAGTTTTTCCATAATCTAAGCTTTACCTGACAAAGTTAAGAAATACTCTAAACCCcaatgtctttactgtataTGCTGTGTATGTACACTACTTTTTGAAAGTTTCGGGtcactattttgttttttaagaaagtacagattttttgtatttatcagAAGTTAAATTAAAGACATAAAATTACCACACAATGAAAATctgatattttcatttgtacagtaaaaatttggcacaatttttactgtatcttgaattaaataaatgttcataagAGACTACTTTTAAGAACGTTAttactgactccaaacttttaaactgtagtgtgtgtgtgtgtgtgtgtatggggcTACCTGTCATGTGGGTaagttacaattattttatgaattatttaagataaatttaggttttaaatacagttagattgtgattttttccattttgttatgttagtatttttttaaatggtccCATCATGACAAATTCCTTTTAATGTGACAGCAGTAACAAAGTTTGTTCAATTAATCGTATTATTGTTTCTTAGAAAATAGTAGCAAATatagtattttgttttagtttttaaaatgaattcaacctaagaaaaaaatgacaactggcctcaataaatattcatatatacacattatatatacagaatatatgGACATTCGGGTTAAGTTGCAGAATGTGTTCGTCTGgagtttatgtatatttgtaaatatgtttaaaacctGCAATTCCCTTGTAAAAGTGGCTTGTAGCCTCAAGATAAACgttcatgtataaataaaatttaaactattttaatcaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111374 lncRNA upstream 34101 6578172 ~ 6579929 (+) True G75236
TU111367 lncRNA upstream 69785 6542088 ~ 6544245 (+) True G75230
TU111315 lncRNA upstream 409109 6179206 ~ 6204921 (+) True G75192
XR_006251905.1 lncRNA upstream 423590 6186147 ~ 6190440 (+) True LOC122352660
TU111146 lncRNA upstream 638472 5942274 ~ 5975558 (+) False G75102
TU111557 lncRNA downstream 19822 6644036 ~ 6650405 (+) True G75361
TU111558 lncRNA downstream 19822 6644036 ~ 6655910 (+) False G75361
TU111573 lncRNA downstream 110718 6734932 ~ 6759645 (+) True G75371
TU111608 lncRNA downstream 357597 6981811 ~ 6985897 (+) False trpc7a
TU111609 lncRNA downstream 368625 6992839 ~ 6993208 (+) False trpc7a
XM_043250508.1 mRNA upstream 3155 6602377 ~ 6610875 (+) True letm2
XM_043249826.1 mRNA upstream 98103 6507050 ~ 6515927 (+) True r3hcc1
XM_043250140.1 mRNA upstream 107945 6502318 ~ 6506085 (+) True golga7
XM_043249895.1 mRNA upstream 158985 6454065 ~ 6455045 (+) True LOC122352486
XM_043250695.1 mRNA upstream 167108 6422217 ~ 6446922 (+) True ppp3ccb
XM_043249827.1 mRNA downstream 1218 6625432 ~ 6626598 (+) True prnpb
XM_043250756.1 mRNA downstream 357278 6981492 ~ 6993621 (+) True trpc7a
XM_043250022.1 mRNA downstream 439447 7063661 ~ 7076378 (+) True LOC122352574
XM_043250026.1 mRNA downstream 452347 7076561 ~ 7082454 (+) True LOC122352576
XM_043250027.1 mRNA downstream 452350 7076564 ~ 7082454 (+) False LOC122352576
TU111380 other upstream 141923 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 524443 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1051945 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1113726 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1355207 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 518079 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 529372 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 529372 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 584321 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 619053 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile