RNA id: XM_043251091.1


Basic Information

Item Value
RNA id XM_043251091.1
length 2396
RNA type mRNA
GC content 0.45
exon number 12
gene id slc2a11l
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5384222 ~ 5391563 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgcacacagtatacacatttacatatattatgtaaacaaaaacttcaattttgaatgtgattaatcacaattaatcatttgaatgcgCTATTAAAAATGGAATTATGTTAAGTCATCCTGATTTGCATCTACTCCGTTTGAGACCTAACACCTGGCACAGAACTGGATTTATGGgtaaacataaattaaacagtCAAACATCAAATGTTGAAACCTTTGTGttcttgaaaaatgaaatgactttGTGTAATTTACGCTGGAGAAAGAAAACTCATTATTTTGCTGAACAAACGTCTATTCAATTAATGTCAACAACAGGCTTAATTTACTCATAAATTCAATCCGTTGTTCTAAAAACCCATTAGAAATTCCCACGGGGTTCCCATAGTGAATTAGCATTCCGGGTCAGCCTACAAACTGACATCAGGAATTAAAAGTTGGATCACTTTATTTGTCGTGATAAAATTATAAATCGATtgccatgttatttttattgttggaaAGTGGACAAATATTGaagcttaaataaaattgtttttgtaaccTCTTCTCAAATGTCAGTGTCATTTCAAAAGTTGCCCAAATCGTCGCATTGACGTTTccgttttattaattttggagGCAAAAGAAATCAATGCCCAAGAAACGTGTGAAGATGAATCAAACTCATCAACTTTACCCTACTTTTGTCACCCAAAACTCAACCGAGCACGAAAAAGTTACACATCGACATTAAGTTAGACATTTCTGTTCTTGCTTTGTCATCTTCACTTATAAAGACTTCATGTAGAGGACTCTGCATTTGCATATACAATGACGGGGGCTCTAAGAGAACTTGTGAGAAGCCCTGTGCTTGTTGCAGCCATTTTCATAGCAGGAATAGGAGGAACATTTCAATACGGCTTCCATATCTCTGTGCTTAACTCGCCATCACTTTTTATTAAAGAGCTGGTGAACAGCACCTGCCAGCAGCGTTATGGCCGCGCTCTTGAGCCCTGGGAGCTGTCTCTCGTCTGGTCCTTCATTGTGTCCATATATTGCATTGGAGGGCTGGCTGGAACCCTGTATGCTGGACATCTGGCAGGAAAGTATGGAAGGAAGACGACTCTGCTTTTGAACAATGTGGTGGCAATCTGTGGAGCTGTCCTGATGTTGTTGAGTAAAACCGCCCTCTCGTTTGAGATGATCATGGTGGCACGTCTCCTGTACGGCATCAACGCTGGTGTGAGTTTGACTGTCCACACCATGTATATACTGGAGTGTGCCCCCAAGAGGCTGCGTGGGATGGTTGGTGTGTCTGTGGCCTCTTTTGTTTCAATGGGGAAGTTTTTTGGCCAGCTTCTTGGGATCAGCGAGGTGTTAGGCACCGAGGAGGGCTGGATCTGGCTGCTGGCCTTCAGCGGGGCGGCTGGTGTCCTGCAGCTAGTAACTCTGCCCTTTCTTCCCGAGTCCCCGCGGTACCTCCTGCTGGATAAGGCAGACAAACACGGCTGTGAGAAGGCTCTGCGCAAGCTGTGGGGAGCTAAAAAGAACCCTGGACCGGAGATGAAGGAGATGTTGGCTGAACATGCCGCTCTAAAGGGCGTGAAGAGCCACAGCCTCGTGGACCTCTTCCTCGACCGAAACATCCGCTGGCAGCTCCTCACCGTCCTCGTCACGTTCGTCACGCTGCAGCTCTGCGGCATCAACGCTGTCTATCTTTATTCGTTTGATGTGTTCCGAGCTGCTGGTATTGCCAAGGAGAACCTGCGCTATGCCGCCCTGGGGACGGGCCTGTGTGAAGTCTCCACCTCTATTGCCTGTGTGATGATTATCGAGAGCACAGGGAAGAGAGTGCTTCTATTTAGGGGTTACCTATGCATGGCCGCCTCACTGGCCCTGCTCACACTTACACTTTACTTTCAGAAATTTGTATCCTGGATGCCATACTGCAGCATGGTCCTTATTTTCATCTACATCATCTTCTTCTCTAGCGGGCCAGCTGGGGTGACAGCACCACTTCCTGGTGAGATTTTCACACAGTCCTACAAACCTCCGGCGTTCATGGTAGCCTGCGTCCTCAACTGGACAGGACTCTTCCTCGTGGGCATGGTGTTTCCTCTCATAGTGGAGCATTTGGATTATTTCTGCTTCCTCATATTTTTTGCGTTCTGCTTCTTCTCTGGTGTTTTCGTGTGGTTCCACGTGCCTGAGACAAAGAATAAAACTGTTCTGGAGATCACAGAGGACTTTAAGAGAATGCACCAGAAACGCAGACACTCACTACAGTCTAAACTGAGCTCAATACACGTTATCAGCATCCAGAGCAGCGTATCTACCAAGCTTTAGCACCAGTTTAGTAACAGTCATGTAGTCACATTAGAAGCTGAccaataaaaagtcattttacgCCCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110923 lncRNA downstream 148273 5235606 ~ 5235949 (-) True G74959
TU110921 lncRNA downstream 244763 5137567 ~ 5139459 (-) True G74957
TU110919 lncRNA downstream 247046 5136158 ~ 5137176 (-) True G74955
TU110878 lncRNA downstream 282803 5097644 ~ 5101419 (-) True G74923
TU110907 lncRNA downstream 288194 5095628 ~ 5096028 (-) True G74944
TU111074 lncRNA upstream 106920 5498483 ~ 5500310 (-) True G75049
TU111102 lncRNA upstream 167379 5558942 ~ 5559159 (-) True G75065
XR_006251947.1 lncRNA upstream 487156 5878719 ~ 5890613 (-) True LOC122353023
TU111192 lncRNA upstream 497411 5888974 ~ 5889561 (-) False LOC122353023
TU111182 lncRNA upstream 512817 5904380 ~ 5906868 (-) True G75134
XM_043250465.1 mRNA downstream 1297 5371876 ~ 5382925 (-) True LOC122352800
XM_043250485.1 mRNA downstream 59472 5284087 ~ 5324750 (-) True gnaz
XM_043250486.1 mRNA downstream 81114 5284087 ~ 5303108 (-) False gnaz
XM_043250083.1 mRNA downstream 105024 5274471 ~ 5279198 (-) True rab36
XM_043250009.1 mRNA downstream 110068 5253037 ~ 5274154 (-) False depdc5
XM_043250807.1 mRNA upstream 147 5391710 ~ 5396170 (-) True ska1
XM_043250802.1 mRNA upstream 4959 5396522 ~ 5412369 (-) False smarcad1b
XM_043250801.1 mRNA upstream 4959 5396522 ~ 5409164 (-) False smarcad1b
XM_043250800.1 mRNA upstream 4959 5396522 ~ 5409164 (-) True smarcad1b
XM_043250446.1 mRNA upstream 64931 5456494 ~ 5463269 (-) False stard7
XR_006251921.1 other downstream 1471480 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1471480 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1776434 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 2044293 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 3186911 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1146971 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1236862 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1236867 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 1785761 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 1786188 7177751 ~ 7180821 (-) True G75454

Expression Profile