RNA id: XM_043251099.1


Basic Information

Item Value
RNA id XM_043251099.1
length 5046
RNA type mRNA
GC content 0.44
exon number 36
gene id LOC122353167
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4823464 ~ 4867579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTGAGTGTGTCAGACGCGAATACAGCGGCGGACAAGCGACTGGAAATGTTGCTTAGCAATATACGTTGATTTTCAACACGTATAGGCAGGCTGCGAGTTATTAAAGCTTTTACGGGAATATGAAGTGCTGACTGAAATGCAAAGAAAGACAGCCATGACGGATGAAAAAGAAGCTATAATGGGTGACAGGACTCTACCTAATTGGATGAACAAACCTCAGGAAGAACATACACAAGGACCCTATAAAAAGAGCATTCTGGAGGATGACCTTCCTTATCTGGAATTTGGTGGAACAGTCATATACAGCCAGGAAAGACATGACTGCTCATTTTTATCAGAAGATTTGAGATCTAATTTGGTGTCAGGTTCAGTGGTTGGGTTTGATCTTGAATGGCCACCCAGCTTCACCAaaggaaagacaaagaaagtGGCTGTAGTGCAGTTCTGTTCATCAGAGGAGAAATGCTATCTATTTCACATTTCCTCCATGTCAGGGTTTCCTACTGGCCTGAAAATGCTTTTGGAGGACGAAAATATCAAAAAAGTTGGTGTGGGAATTGAGGGTGACAAGTGGAAGTTGCTATCTGATTATGACATCAAGTTGAAGAATATTGTTGAGCTCTCTGATCTGGCAAACAAGACGctGAGATGTTGTGAGAAGTGGAGTTTGGATGGTCTAGTGAAGCACCTGTTGAAGAAGCAGCTCTTCAAAGAGAAACTTGTGCGCTGCAGTTCCTGGGATGACTATGGTCTGACAGAAAATCAGAAGAAGTATGCTGCCACAGATGCTTACGCTGGATTGCTCATTTATCGGAATCTACAGGAAATTATGTCCGACTGCTCAGAAACCCCAGCGCTCGCTTTGAAACAGAGAGTTTTTCAGATTGCTTGTGATCTTAATAATCTCGCTGATAATCTTCCAGATGAGCTTGACTGCATGACCAGTGCTGTGAGACTAGTGGATGATCTGTCTCAAACCGTTGCATCTCTAAGATGTGTTTtgtcaaaaaacagcaaaacgtTTGAAGCTAAGCCTAAGCCACATAACCAAGACCAGAGCCATAGTCAGTCTGAGGAAGACATCAACAGGCACactgagagagagtgtgtgacgTCTCCGGATATCTCTGAGTATGAGCTGCAGATGCTAGAGCAGCAGACCAGACAGGAGCTGCTGGAGGAAGAATGTATCTTAGCTTTCCAGACTCAGCAGGCATCATGCCCAAAGAACTCTAATGACATGGAGAGTGATGAAGATTTTGATGATGAAATGATGAAGTGTGCTGCTGACATAGAACGAATAAATTGTGAACGTGGTCATAAGAAACAGGAACTTGTCTCACGGTCTGGTactgaagatgatgatgaagatgttgAGGAAGACAAAGAAGAGGGGTTTGaTTCAAGCATCTCACAACCTGTTCCTGAACaaattaaacatctaaaaatgtactttggACACCACAGCTTTAAACCGGTTCAGTGGAAAGTGATTCACTCTGTTCTCACTGAGAGGAGAGATAATCTTGTGGTCATGGCAACTGGTTATGGGAAAAGTTTATGTTTCCAGTTTCCTCCAGTGTATTGCCAGAACGTCAGTGTGGTCATTTCCCCTCTCATCGCTCTCATGGAGGACCAGGTTCTTCACCTACAaATGTCAAACATTCCTGCTTGTTTTCTTGGAACTGCTCAGACGAAGAACATATATGAGGAAGTGAAGAGGGGTCATTTTAGGGTGGTGTACATGACACCTGAGTTCTGCTCTGGGAATATTCCTCTCCTAGTGCAGCTTGATAGGACTATTGgttTATCACTAGTTGCGGTAGATGAGGCTCACTGCATATCTCAGTGGGGCCATGATTTCAGAAGTGCGTATCGTGACCTGGGGAAACTCAAGAAAAATCTCCCTGGCGTGCCAATTTTGGCTCTAACGGCTACCGCAAGTCCGTCTATCCGAGAGGACATCATTAAGAGCCTTAATCTGATCAACCCTCTGATCACCTGCACCTCTTTTGATCGACCAAACCTCTACCTGGATGTCAATCGCAAGTGTGGTGATGTTATCCAAGACCTTAAACAATttctcatcaaaaaaaaagggggTGGTTTTGAGTTTGAAGGCTCAGCCATTGTCTACTGTCCATCGAAGAAAGAGGCAGAGCGTGTGACTGCAGCGCTGTGTAAGCTGGACATCTTGTGTGGAGTTTATCATGCAGGTTTAAGCATCAAAAAGAGGAGAGAAACCCAGCATCAGTTCATGAGGGATGAGATTCAGTGTGTAGTGGCCACTGTGGCATTTGGGATGGGCATTAATAAATCTGATATCAGGAAGGTCATCCATTATGGAGCTCCCAAAGAGATGGAGTCATATTATCAGGAGATCGGGAGGGCCGGTAGAGATGGGCTGCCAAGCGCCTGTCACGTCCTATGGATGCCTGGAGATATGGCCCTGAACAGATTTATTCTCAACCAATCCAAAAGTGAGCGCTTTAGAGATTACAAAATAGACATGATGGCAAAGATGGAAAAGTATTTGAATTCAGCCAAATGCAGGCGAAAGTtgattttgtgtcattttgaaGACAAACGTTTGAGAAAAGTGACTTCTGGAATAATGGGTAGCAGTAATTGTTGTGATAACTGCCggtcaggTGTAAACAGAGAGGATCCAGAGGTGGTCCTGCAGGACTTTGGCTTATGTGCATATCAGCTGATGAAGGCTGTCACCGCTATGGATGAGAGGTTCGGCATCACAGCGCCCATCCTCTTCCTGCGGGGCTCAACCTCTCAGCGGGTTCCAGATCGCTTTCGGAAGCACTCTCTCTTTGGGATCGGCAGGGAAATCTCAGAAACTTGGTGGAAAGCTCTCGGCCGAGAACTTGTTGCTGAAAAATATCTGATGGAAACCACAGGCCACAACAAATTCTCCACTCTCTGTAAACTCACGCCCATGggCAGATTGTGGCTGAGTAAAGCTGAAGATGAGAGGCACAGGCAACTCCTGCTACAGCCCAACAGAGATCTGTTCAGCAGAGTGTGTGTACCGAGGATAAAAGCAGATCCAGCACATGTTGAGTCTACTGCTTTTAAGCTGAAATCAGATTACACTCGGCGGGCAAAGGTCAGTTCTGGAGTTGATATCCAACAGATGAAAGCAGATTTACCATCAAGATCAGCTGTTAGACCAACCCAGATTCACACAGCCCAGACTCCAGCGGTCTCAGCTAGAGAAATCCAGCTACAGTCTGAGCTGTATGGTAAGCTGGTGTCTGAGCGTCAGAAGTTAGCTGGTCTTAGAGACATCCCACCAGCTCTACTGGCCACCAATAAAATACTCTTGGATATGGCAAAATCAAGGCCGTGCTCAATATCCAGCTTGAAACAAGTGGATGGTGTGTCAGAAGCCAAAGCAGCCATGTTAACACCTCTCATTGATGTCATTCTCGCATTCTGTCAGACACACAGTTTGCAGGTGGATGATTCCTCCAGCTCTACTGCACCTGTCCAAACGGAGTCTAGCTGTGAATACAGTTCTGTGGGTCAGTCTCTACCTGACAGTGTCTCTGTCACATACAGACTGTTTCAGATGGAGCTCAAGAGCATGAGGCAGGTAGCAGATGCTCGCAGTCTGCCTATTGCAGTGGTGGAGTCTCATCTGTTGCAGGCTCAGAGGATGGGTTATGCTGTGGACATGAACAGAGCTGGACTCTCAGAGTCCATCTATAACACCATAAGAAAAAGCATCAACTCTCCTTCAATCAGCCCAGATCTGAATGATTTTAAAGTGATTCGTTCTCATGTCCCTGAAGATGTCAGTAGCTTCCTGATAAGGCTGGCACTTTATGAACTCCAGAGAGAAGCTTCATTCACAGCACATCATAAGATCTCCTGGATGGAGCCACTGGATAAACCAGCAAGTGCAGACAGACCTGCTGTTAAACATGTGATTGGAGAGTCACAGCATGAGGCAGACACCATGGACATGAGTGAAGATGACCTCTTCATCAGTATTCCCATGCCACAGGTGACTCACATCTGTCTGTATCAGAGAGCCTATTACACTGATTACTGTCTGAAGTCATGTGACCTAGTTCCTCAGAGCAGTGGAATGGATCTGGCCTCCTGGAATCAGGGTAACCTGGATAAAGACACGCAAGATCTCTTCAGCGATTCACCTGTGAAGATTGAAAGTCAGCCTGCAAAGAGAAAAACTGTCTGACCGGACTGAAGGACCAAACACTTCAGTACCTGCCATGACCGAGAAGAAAGCCAAAAAGAAGAAAGGACTTTTCATTTGATACTTATTAGGCTGTGTAGTGTacgttttgatattttgtataagatttaaaataacctaaatatatattattctataaGAATGTCTTGTTAATTTTCTGAATTTGTTCTCTGTTGTGAAAAGCTTGTGGTCTGCAACCAGCTTGATTTCTTACCGACTGACACACAAGTTAGTGAATCTTCCTCGATTTGCACATATCATGTTTCTACGTCTGTGAGTTGCCTGAAGCTGTATGTTACCGACTTTCACCTGTCGTATGGAAACACTCCCAGAATCCTGTGCAACTCCCGATTTTGATAGTTCAGTGTTTATTGAAAGGAATAAACAGCAACAACCGTCGTAGTTAATACAGTATTGATGCAATTTCAGTTAGGTATTCGCAGTGATGgagtgatttttatttgactttatttgacTTATGCTTGCCGTAACTGAAGCAGACCACTCGCAAAGCAGTATTTGTGTCCTGGTCCTGTAAAAGTTAATTTGCAAAGTCCATTCCACTTATGGCTCTGTGCTAAATAACCACATAACAACAGAGCCTTAAAACATGCCAAATATCTGTCCCTCGACATTATTACCAAAACCTGTCAGTTTGGTTTTAGTAGGAAGTCTGTCTTCACCTGAGCACATCTAAGTCTGCCTCTGTCCTGCTTTCGTTGTGCCACAATGAAGCACAACTGGCTAATTTTTGAATACAAATGTAACcacaataatcaaataattaaaggTTTGTAACTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110726 lncRNA downstream 143232 4679703 ~ 4680232 (-) True G74819
TU110694 lncRNA downstream 312522 4510546 ~ 4510942 (-) True G74803
TU110610 lncRNA downstream 326806 4495060 ~ 4496658 (-) True G74762
TU110687 lncRNA downstream 458706 4363404 ~ 4364758 (-) True G74796
TU110679 lncRNA downstream 499514 4298736 ~ 4323950 (-) True G74791
TU110793 lncRNA upstream 24015 4891594 ~ 4897087 (-) False G74858
TU110794 lncRNA upstream 24015 4891594 ~ 4897087 (-) True G74858
TU110797 lncRNA upstream 36398 4903977 ~ 4904469 (-) True G74861
TU110807 lncRNA upstream 59626 4927205 ~ 4927617 (-) True G74869
TU110866 lncRNA upstream 93991 4961570 ~ 4962233 (-) True G74915
XM_043249807.1 mRNA downstream 196423 4590288 ~ 4627041 (-) True LOC122352396
XM_043250408.1 mRNA downstream 448317 4358660 ~ 4375147 (-) False nrg1
XM_043250037.1 mRNA upstream 38302 4905881 ~ 4911182 (-) True ubxn8
XM_043249808.1 mRNA upstream 133105 5000684 ~ 5017151 (-) True LOC122352400
XM_043249781.1 mRNA upstream 151728 5019307 ~ 5028513 (-) True LOC122352369
XM_043250004.1 mRNA upstream 161726 5029305 ~ 5031460 (-) False LOC122352563
XM_043250003.1 mRNA upstream 161726 5029305 ~ 5031327 (-) False LOC122352563
XR_006251921.1 other downstream 910722 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 910722 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1215676 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1483535 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 2626153 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1670955 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1760846 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1760851 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2309745 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2310172 7177751 ~ 7180821 (-) True G75454

Expression Profile