RNA id: XM_043251107.1


Basic Information

Item Value
RNA id XM_043251107.1
length 1663
RNA type mRNA
GC content 0.53
exon number 8
gene id brf2
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15989593 ~ 15993972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGTTCGTTTTGATCGTGCATTAAAGTAATACGTTTCAGGATTAACCGCCACCAGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGATGTATCGTTCATTTCCCAGACTCCGAACGCTCCGCACCGTTCACCTGAGGCTGAAATGCAGACCGATTAAAATGTCTGGTGACAGGAGAGCTGTTGGTTTTTAAGATCAATTGCTGCTTTGAACGAAAAGCCCTTCTGGCGACAGGAAGTCAGTCGACGCCTCGCATCCTGATGTCTGAAGCGTTTACACAAG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115092 lncRNA downstream 2106 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 57942 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 61276 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 62095 15927186 ~ 15927498 (-) True G77830
TU115104 lncRNA downstream 68233 15920921 ~ 15921360 (-) True G77827
XR_006251962.1 lncRNA upstream 105024 16098995 ~ 16101344 (-) True LOC122353141
TU115278 lncRNA upstream 178507 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 184629 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 195563 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 195563 16189534 ~ 16193540 (-) True LOC122352611
XM_043250490.1 mRNA downstream 31148 15931955 ~ 15958445 (-) False aak1b
XM_043250432.1 mRNA upstream 941 15994912 ~ 16009528 (-) True rab11fip1b
XM_043250433.1 mRNA upstream 941 15994912 ~ 16009517 (-) False rab11fip1b
XM_043250694.1 mRNA upstream 22705 16016676 ~ 16021774 (-) False LOC122352931
XM_043250693.1 mRNA upstream 22705 16016676 ~ 16021774 (-) False LOC122352931
XM_043250692.1 mRNA upstream 22705 16016676 ~ 16021774 (-) False LOC122352931
TU115089 other downstream 92495 15893683 ~ 15897098 (-) False npffr1l1
TU114910 other downstream 631361 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 699921 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 881841 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1399694 14569361 ~ 14589899 (-) False vwa3a
TU115119 other upstream 22700 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 36556 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 124815 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 124981 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile