RNA id: XM_043251130.1


Basic Information

Item Value
RNA id XM_043251130.1
length 3427
RNA type mRNA
GC content 0.45
exon number 16
gene id alcama
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11290898 ~ 11350637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCCACTGCTCGTCCAGACTTCACCTGCGAACTACGCACAGAGCGACCGCCTGATCCTTTCAGCACACTCAACTACAGAGTTCCCTCGATACTATCAAACAACTTCCGACGTACAAATATCTGTTGAAAATCTCTTCGGACTGTATAAAGGAGAGCCGGGGTTTTCTATAAGGATGCAATCGCTTATCTGCCTTCTCGGTGCCTTTTTAGCAGCCGCTGTGTTTCATCCAGGGAGCTGTGTGCAGACGGTTATAGGTCTGTACGGTGAGACCATAGAAGTGCCATGCAACAATGGAACTAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATACGTGAAAGATGATGGCTCTCCTGGCGATCTTCTCGTGAAGCAGGCTCAGAAAGAAGAGGCCACCGTATCTGCCACGGATGGCTACAAAAGTAGAGTTAGCATCGCCACTAACTCCAGCCTCCTGATCGCCCGAGGTTCACTGGCCGACCAAAGAGTTTTCACCTGCATGGTGGTGTCTTTAACCAACTTAGAGGAATACTCTGTGGAAGTGAAAGTTCACAAAAAACCATCAGCCCCTGTGATCAAAAACAATGCGAAAGAACTGGAAAACGGCAAACTGACTCAGttGGGGGAATGTGTGGTGGAGAATGCCAACCCACCAGCAGATCTCATCTGGATGAAGAACAACCAGCCCCTAGTGGATGACGGCAAGACGATCATTATCACATCTACTTTCACCAAGGACCCAGTCACAGGCCTGTCCAGTACTTCTTCCCGTCTACAGTACACAGCCAGGAAAGAGGATGTAGAATCACAATTCACCTGCACGGCAAAGCATGAGACGGGCCCCGACCAGGTTTCAGAAGCCAAGACTTTCCCTATTCATTacCCAACTGAGAAGGTGAGTCTACaggttgtttctcagagccCCATTAGAGAAGGTGatgatgtgacactgaaatGCCAGGCGGATGGAAACCCCCCTCCTACCAGCTTCAACTTCAACATTAAGGGCAAGAAGGTCACGGTGACGGACAAGAATGTTTACACTATGACTGGCGTTACCCGAGCGGACAGTGGCATTTACAAGTGCTCCCTGCTTGACAACGATGTGATGGAGTCCACTCAGTTTGTCACCGTGAGCTttctggATGTAAGCCTCACTCCTACAGGCAAGGTGTTAAAGAAGCTCGGGGAAAACTTGGTGGTGTCGTTGGATAGGAACGCCTCGTCTGAAGTTAAAGTGACATGGACTAAGAATACCCATAAATTAGACAAACTGCCTGACTTCTCAAAGCTGACCTATAGTGATGCAGGCACCTATGTGTGTGACGTGTCCATTGAAGGAATGAAACGCAACTTGTCCTTTGAGCTTACAGTGGAAGGTATTCCCAGAATTACAAGTCTGACAAAGCATCGCAGCTATGACGGCAAACACAAAGTCTTGACATGTGAGGCAGAAGGCTCACCTAAACCTGACGTGCAGTGGAGTGTCAACGGAACTAACGAGGAATCGTCGTATGTGAACGGGAAGGCCACGTACAAGCTGACCGTCGTGCCCAGCAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAATCTCGGTTTCGACTCGAAGGAGATCAGCGTGTTTTCTCTATTTGAGGAGGACACGCGCAAACCAGAGAAAAACGAGGACGGCACGGAACAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGCTTGTAGCCGCTGCTTTGGTGGGACTCACCTACTGGCTCTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGGGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAAAGAGAAGAGCGCAGTCAAAGACGAACGAAGAAGGAATGAACCAGGAAAGAGGCCTTGTCAACACTGAATGTGCAGTACTACACACTTCGATCATCTAATTCCAGACATCTGATTGGACAGCGACGCCTCCCTCGGGCTGCTCGTGCGCGTCACGCATCACAGAATGTTTTCAGAATATTTCCTATTGCAAATAaactgtttgttaaaaaaaaaaaagaaaaaaaaagaaaaaaatccccACCACGTTTCAAAAAGTGTAAAAGAGAAAACCACTTGTGTTGTAAATTTAGTCTGCACTGAGGACTGCATTTACTTTTGATCGattctgacttttctttttgtgttcccAGTGAATGTTCTCCTTTCATGCGCATTGCTGATGTGGTGGGCACAGCTGTTTTGTTCCCCctctagataaaaaaaaaaaaaaaaaaaaatgtaaattcgcTGTACACTTTTTAGGCCTGTGTAAATACGGGGAATACGTTCACTACTTAACGTTggattattgaaaaaataacagATAATACTGGATTTTGGGATTATGTATTGATATCGCACAGTCCCTCCACAGTCGAAAACTCCTAAGATCGCGGTCGGATGCTGGAAGAACGATGAATTCACTGCTGTTACACCTCTGTTCGCTCacgttttatttattggtaCCTCTTTACGTCACTGCTCTATTCATGTTATTTCCTCTAGTTCGAAAGTGGCTAAGTAGTGAAAACGGGTTTAGAAATTTAGCATAGCATAGCGAGATTTTCTGCTACACCCAGTGGCCTTCAGGTTGCATTGCATGATGTCATAGTTGTAGGGCTCTGAACTCAGCAGAACACGGCCCGCTAGGGTTTAACGTAGCGACATAGATGTGACTTGCATATAGTATAAACAAGCAAACATCCACTCTCGGTATCAGACTGGGTGGTAGCGACCTTGCATGCagagactttatttattttattttttttttgtcggtaggaagtaaatataaaagaatagcCCCATTATTCTGCCTTAACAGAAAGAGTCAGTATCGGAAGGCAAACGCGTTAATGTGAAACCTCACTGTATAGCCTTTCGGTTTTGCACTTCTCTCGGACTACAAAAACTgtatcttttgttgtttttacacacCATTTTCTGTATCCGCGATACGTCAGGTTGATGTCCGACACTGTAGTCTTTAAGGATGGGTTCTGTTCGTTGTGGTCTGAAGAAGCTGTAAATATGTTTGAATGTCTTGCTTGTGTTTGGCTATTTATAATGTGTGAGAAATGCAAGGTTTAGCTGTGCTTCTGCTTAGTCACTAAAGAGaccctttttatttaaaatgtaatctcaCTTTGTTACGCATACTCagctttcactttttgttttcgtCTCCACAAACGAGCGTTTTGAATGTCCTTGTTTAGCGTAACCGTCTCGCATATTTTGAACCATCAGGTCAGCAGTGAAACCAAAGAGGGTAACCGCAAAAGAAGGCCATAAAGTATTGTAAATActgacttttgtttttgtacttttgttgacaataaaagtgtacattttgAA

Function

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0007155 cell adhesion biological_process
GO:0030424 axon cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113433 lncRNA downstream 58 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA downstream 55208 11234372 ~ 11235690 (-) True G76662
TU113412 lncRNA downstream 180063 11096963 ~ 11110835 (-) True G76642
TU113395 lncRNA downstream 199837 11087586 ~ 11091061 (-) True G76627
XR_006251883.1 lncRNA downstream 246045 11026069 ~ 11044853 (-) True LOC122352521
TU113502 lncRNA upstream 135269 11485906 ~ 11486428 (-) True G76693
TU113507 lncRNA upstream 154673 11505310 ~ 11584960 (-) False ccdc83
TU113584 lncRNA upstream 351234 11701871 ~ 11766210 (-) False G76755
TU113585 lncRNA upstream 411080 11761717 ~ 11766210 (-) False G76755
TU113586 lncRNA upstream 411080 11761717 ~ 11766210 (-) False G76755
XM_043250270.1 mRNA downstream 85672 11182738 ~ 11205226 (-) False LOC122352715
XM_043250272.1 mRNA downstream 118584 11168125 ~ 11172314 (-) True LOC122352716
XM_043250273.1 mRNA downstream 118584 11168126 ~ 11172314 (-) False LOC122352716
XM_043249972.1 mRNA downstream 132164 11151111 ~ 11158734 (-) True LOC122352533
XM_043249950.1 mRNA downstream 141205 11145385 ~ 11149693 (-) False btg3
XM_043250117.1 mRNA upstream 101986 11452623 ~ 11457502 (-) True si:ch211-103f14.3
XM_043250856.1 mRNA upstream 108196 11458833 ~ 11466838 (-) True zpld1a
XM_043250114.1 mRNA upstream 155564 11506201 ~ 11510464 (-) True ccdc83
XM_043250948.1 mRNA upstream 180200 11530837 ~ 11533005 (-) True tmem126a
XM_043250947.1 mRNA upstream 180200 11530837 ~ 11532486 (-) False tmem126a
XR_006251915.1 other downstream 83646 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 85671 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 85672 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 85672 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 85672 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1431716 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 2188092 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 2292654 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2455482 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2851625 14202262 ~ 14204127 (-) True G77440

Expression Profile