RNA id: XM_043251164.1


Basic Information

Item Value
RNA id XM_043251164.1
length 3399
RNA type mRNA
GC content 0.46
exon number 3
gene id lrrtm4l1
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6061191 ~ 6089587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACATTCATCAGCTGTCCCGGTTGGTATGTTCTGGCATTCTGCTAGTGTTTACCGCAGCACGTTTGCCTCCGGGTCACCTTTATTATGACTGTAGAGGACCTGAGGGCGGGAGCGCACAATCATCACGGTCTGTGATATTTCTCAGGGACGGAGCAGCTCCGAGACTCTCTACTGCGGCGGCGAGCACAGCTTTCCTCTCACGCAAAGCCCTCAAGACTCAGTCTTTCTCGGCTTTGCTTACCTCTGGCACCTCCGGTCGATAAGATCCGCACGATTTAAACATTATCGTTCCAGTTATGCGACCCAGAACAACTTTTGCCCTCATCTTCAGTCAGTTGCTTGCTGCGTAGCGAGAATCCGTTCACGTTCCGTTTGAACGACGGATGGCCATCATGTTAATTGCTGTTGGATATACACCGCTTTGTCGCGTTGTTGGATTAAACGGGGGACGCGGCGCGTTTTAAAGTGTTTTGCGATATGGAGTCGGATCGATAATGATTTTAGTTGGGCTTTAATACTGCTCGGACTAAAGGTAAAAGTCTTCGTTGGAGTGGATCCTGAGAGACTGAATATCTGTGCAGTAACCGCAGGGATTAAACGCGAGCGGAATCAAAAGCGCGCGGCTGATATGGGTTCTGTTATTTGTGACAAGAGATTAGCGGGCCTCCTCCTCCTTCAAGCCTCCTCCCTCCTGCTATTCAGTTCTGGGGAAAGGATGTGCCCCTATAGTTGCCGTTGCGAGGGAAAGATTGTCCATTGTGAGTCGGTTGGCTTTCAAGACGTCCcagaaaacatttcagttaGTTGTCAAGGTCTATCCCTACGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTTAACCAGCTACTGTGGCTGTACCTGGACCACAATCAAATCATGTTTGTGGATAGTCGTGCTTTTCAAGGGGTGCGACGATTGAAGGAGTTGATCTTGAGCTCCAATAGAATTTCACAGCTTCATAATGCCACTTTTCACGGAGTACCTAACCTACGCAGTCTCGACCTCTCCTACAACAAGTTGCAAGAGCTGCAGCCGGGCCAGTTTTTTGGTCTTCGAAAACTGCAGAATCTGCACTTGCGCTCCAATGGGCTGACCACAATCCCTGTCCGGGCATTTCTAGAGTGCAGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTTACTCGTACCGCATTCCTGGGTTTGTCTCGTCTTATGGAGCTCCACCTGGAGCATAATCAATTTTCACGAAtcaacttctttctttttcctcgCCTTGCTAACCTCCGTTCCCTGTATCTACAATGGAATCGTATTCGAGCTGTTAACCAAGGCCTTCCGTGGAGCTGGTACACCTTGCAAAAGCTTGATATCTCTGGCAATGAGATACAGGTACTAGATTCTGTAGTATTTCAATGCCTTCCCAATCTTCAGGTGCTCAATTTAGAGTCTAACAAACTGGCCAATGTGTCTCAGGATGTTGTGGCTGCCTGGATCTCCCTAACAACCATTAGCCTTGCAGGCAACATGTGGGATTGTGGGCCAGGCATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAGTATAATCTGTAGCAGTCCTAAGCACCTTCAAGGGGAGAAGGTCATGGAGGCTTCGAAGAACTACATTGACTGTGATGACTACGAAATTACTGCTCAGTCACCTTTGTATCTGCAGACCTTTGATCCAAATTTTGACCTTACCCTCGAACCAACTGACTCGACAATGGCCCCTACAACACCACCTCCACCCCTGCCTTCACCCGCCTCTGAGGCGCCATTTCCACCTCCCCATCCTCGACCGCCTCAGCGCCCCACCTTCCCCAGCCATGCAAATCCAGATCCCAGAGACTCCCATCAATGGACACCCTCACCATCCGACAGCTTATTGGTCACAGCAGCTCCTGAGCAAGACAACGTGTCATTTCACAAAGTGGTGATGGGTGGGGTGGCACTGTTCCTCTCAGTGTCCCTTGTCTTGTCGGTAATTTATGTCTCCTGGAAACGTTACCCCGGTGCCACCCGGCTGTTGCAGCAGAGTACAGTGGGTCGTAAGCGAAGGAAAAAGAGTCAGGAGCCAGAGCAAAACCTGAGCTCCCAGCTCCAGGAATATTACATGAGCTACAACCCTGCAGCCACGCCAGAAGCCTTGGAGGTGCTGGGCAATGGGACAGGTACCTGCACCTGCACCATATCCGGCTCCCGGGAATGTGAGAATGAATACACATGTCCCAGACCGTTACCTGGAGCCTGGATCGGAGACATACCCACCATACACTGAAGGGACCGTTTTGTTCCCCAAAATAATCCACTGGCAGAGGATTAGTGCCTACCTGCATTTCATCAGTCGCATCAAGCTTTGTTCTCATGATACCACTCATGCTTTCAGCGCTTTCTTTAATGGATTGTGGTGGATATTCTTCAGTCAGACTCTGCAAAACGGACATCTGAGAGACAGACGGGACAGATGCCTCAGATGCATATTTTACTAAAACACATTTGGATGCCTCACTTTGTTCTTTAACGCGCTTGGATACATTTGTCAGGTTTATTTCGGAAGCCTTCGGTGGAACATACCAATGAAAGTTATCCAGCCTTCGACGAATCGCTCGGCGTCGTCTGACGTTTGCGTGGACTTATACATAAACTACAAACTTTGTTAATACACCCTTCGGATTTAAAACAGGACTTGCCCTTccctttattatttaatgtacatCCTTGGAAAATTTGTGTATCGGAATAACGAAATAAAAGTTCAAACCTTTATCTTTGCTGCCTAATACTGGATTTGTTATGCTTGGCGTTTCTGCAAACTTCTCTGTACAGTTTTATTTGAAGAGATTCTCGAGTTTACCTGCCCTTCATAACAGTAATAAACCACATGCTGTTATTCTGAGTCATTTAAACATAACTCGTGATCTCAATTGACTATGCCAACgctgtttgaaatgtttgagTGTATATATGTAGTCACGTTTTATAGGAGCGCGTGTAAGGAAATGTCAAGATCtgaatataaagaatataaagtCCTACTTTTCAAAGGTGAAGCTTTAAGATTTGTTCCCGTTCCATCAGGCCCCTCAGTCCTCGGATgctgtcttttatttatatgcttctgcattttaatttaacaatgaCATTTTGTAACCAAACTGTGTGATTTCAGCGAGAACGTTGTCAAAATCGATGGTGAGAAATATACATTTGTCAAATGGAAATTAGTATCGATcagctttgttcatttttgatgcatttataattaatactttatttaaggATATGGATTTTACTGCAAAAGCAAAGGCTGGGTTTGTTTTTCACTTGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111146 lncRNA upstream 85633 5942274 ~ 5975558 (+) False G75102
TU111145 lncRNA upstream 115495 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 153664 5907179 ~ 5907527 (+) True G75097
TU111124 lncRNA upstream 339164 5663157 ~ 5722027 (+) True G75083
TU111119 lncRNA upstream 398116 5657359 ~ 5663075 (+) True G75081
TU111315 lncRNA downstream 89619 6179206 ~ 6204921 (+) True G75192
XR_006251905.1 lncRNA downstream 96560 6186147 ~ 6190440 (+) True LOC122352660
TU111367 lncRNA downstream 452501 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 488585 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 554449 6644036 ~ 6650405 (+) True G75361
XM_043250727.1 mRNA upstream 76265 5958839 ~ 5984926 (+) True igsf9a
XM_043250729.1 mRNA upstream 76265 5958839 ~ 5984926 (+) False igsf9a
XM_043250728.1 mRNA upstream 76265 5959551 ~ 5984926 (+) False igsf9a
XM_043249897.1 mRNA upstream 104356 5955111 ~ 5956835 (+) True tmem230a
XM_043250958.1 mRNA upstream 119189 5921159 ~ 5942002 (+) True dpysl2b
XM_043250530.1 mRNA downstream 42502 6132089 ~ 6139635 (+) True vsig8a
XM_043250188.1 mRNA downstream 50401 6139988 ~ 6147864 (+) True atp6v1b2
XM_043249822.1 mRNA downstream 58433 6148020 ~ 6154408 (+) True LOC122352405
XM_043249823.1 mRNA downstream 64973 6154560 ~ 6155729 (+) True LOC122352406
XM_043249825.1 mRNA downstream 186133 6275720 ~ 6277124 (+) True LOC122352409
TU111087 other upstream 499106 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 560887 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 802368 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 811054 5238428 ~ 5250137 (+) False LOC122352567
TU111380 other downstream 364749 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1052706 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 1063999 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 1063999 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 1118948 7208535 ~ 7221528 (+) False LOC122353118

Expression Profile