RNA id: XM_043251167.1


Basic Information

Item Value
RNA id XM_043251167.1
length 1816
RNA type mRNA
GC content 0.48
exon number 9
gene id pcolcea
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7823409 ~ 7829584 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTGGCTGCGTCTGCATGTGGATCTCAGTGCGGAGGAATATGGAGGGTCTGAACGCTGTGTGGAGTTTGGGGATTCTTCTGTCTCTCGGTTTTGGAGGGGTCTTGTGTCAAACCACCAATTACACCAGGCCTACGTTTAACTGTGGCGGTGATCTCTTTGGAGACTCTGGCTTTGTGGGCAGCGAAGGATTCCCATCGTTCTACAAACACGACAGCAAATGTACCTGGTACATCACAGTTCCAGAGGGCAATGTAGTCATGCTGACCTTCAGGATTTTTGACCTGGAGGCTGATCCTCTCTGCCGCTACGACTATGTGGATGTGTATAACGGACACTCAAACATGGTGCAGAAGCTCGGGCGTTTCTGTGGAACGTTCCGGCCTGGATCTCTCATTTCCACATCCAACACCATGATGCTAGAGATGGTATCAGATTCAGGAACGGGAGGAAGAGGGTTCCTGGCCTACTTCAGCGGAGGGAAGCCACATGTGGATGAGCATCAGTTTTGCGGCGGGAAGCTCACAAAGTCCCAGGGCACGATCAAAACCCCCAATTGGCCAGAGAAAAATTATCCACCGGGCATCAGCTGTTCTTGGCTTATAACAGTGGAACCGGAAACGgtgatTGAGGTGAAGTTTGATAAGTTCGATTTGGAGTCTGACACGTACTGTCGCTTCGACTATGTGGCGTTTTTTAACGGAGGGGAGAAGGATGATTCAAGGCGCATCGGAAAATACTGCGGAGACACTGCGCCTCAGAACATCATCACTAACGGCAACGTGCTGTTAGTGCAGTTTGTATCTGACACCAGCGTGACCTCGGATGGATTCATGGCGTCATACACTAGCGTCCCACGTGGTCTCAGTACTCCGACTGCAGATGGCGACATTGCGACAGGACCTAGGGTGTCATCCACAGCCACAAAACCCCGTCTCACCCCAGTCGAACCGGTGAAACCCCTGGCATTTACAACAGAAGcaacaactacaacaacaacaacaactacgACCCCTACAACTACTGAGGAGCCAAAGCAACGACCCAAACCCGTTAGACCCATTAAACCTGTGAGACGTCCAGTCAGTAAACCAGAGCCAGATGAATCCAGACCAGccACAGGGACAGATCCAATGTGTGCAAAGGCATGCAAAAGAGACGGAACTATCAAGACTAGTTTCTGTGCTAGCGAATATGTTATCACCGGTAAGCTGACAGCATTGACTCCCGGGCCCAGTGGAAGTATGCAGGCCAAGGTGTCCTTAATTAAGGCCTATAAGACCGGCAGTCTTACAATCACCCAAGCTGGAGAAACCATGTCTGTCAAACTTACGATGCCCTGCAGGAAATGTCCAGTGCTGCGTAGAGGTCAAAACTATATACTGATGGGTCAAGTGGATGAGGAAGGCCGCGGTGTTCTCAATCCTGGCAGTTTCACCGCCCTGTACAAAGCCCCACACCACAAGATATTGACCAACATCAACAAGCAGCCATGCTGATCTGATCGCTCAGATCCAAGTTAGCACGATCAACCTCCAGAGCACAGACACTAGATGAAAGCAATGGACAGTGATTAGACAATGGCCCAGAACTAGCCTGGATATTAAAAGGTATTTTTGACATTGTAATAAAATGCTCAGGAAGTAAAACACACAATTTCTAATTCGCTATGGTGCATTTCGAGCTGCATTTTATAGTTGTGAGgtaaagatatttttcataCGTCAACATATACACTGAGATgtcacaaaatgtatttgtaatttatgaTGATGTCTTCTAATACAGGATTTATATAACACATTATTGCATTGAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24361 PCOLCE; procollagen C-endopeptidase enhancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112019 lncRNA downstream 59556 7761525 ~ 7763853 (-) True G75667
TU112018 lncRNA downstream 62311 7760833 ~ 7761098 (-) True G75666
TU112005 lncRNA downstream 135436 7687694 ~ 7687973 (-) True G75654
TU111980 lncRNA downstream 207225 7609140 ~ 7616184 (-) True G75633
TU111847 lncRNA downstream 334842 7487473 ~ 7488567 (-) True G75549
TU112126 lncRNA upstream 267722 8097306 ~ 8099806 (-) True G75749
TU112151 lncRNA upstream 335864 8165448 ~ 8165708 (-) True G75767
TU112289 lncRNA upstream 385078 8214662 ~ 8221865 (-) True G75868
TU112290 lncRNA upstream 385078 8214662 ~ 8221865 (-) False G75868
TU112294 lncRNA upstream 401104 8230688 ~ 8260267 (-) True G75871
XM_043250838.1 mRNA downstream 128493 7692846 ~ 7694916 (-) True zgc:172339
XM_043250846.1 mRNA downstream 133914 7688141 ~ 7689495 (-) True LOC122353013
XM_043250816.1 mRNA downstream 137109 7681895 ~ 7686300 (-) False epob
XM_043250815.1 mRNA downstream 137109 7681895 ~ 7686300 (-) True epob
XM_043249877.1 mRNA downstream 234550 7549993 ~ 7588859 (-) True fgf11b
XM_043250289.1 mRNA upstream 3525 7833109 ~ 7849187 (-) False per1a
XM_043250287.1 mRNA upstream 3525 7833109 ~ 7849187 (-) False per1a
XM_043250288.1 mRNA upstream 3525 7833109 ~ 7849185 (-) True per1a
XM_043250867.1 mRNA upstream 21441 7851025 ~ 7859714 (-) True vamp2
XM_043249830.1 mRNA upstream 33026 7862610 ~ 7865286 (-) True and3
unassigned_transcript_1468 other downstream 138686 7684642 ~ 7684723 (-) True trnal-uag_1
TU111870 other downstream 279319 7530861 ~ 7544090 (-) True G75562
TU111872 other downstream 294858 7526243 ~ 7528551 (-) False LOC122352929
TU111694 other downstream 642588 7177324 ~ 7180821 (-) False G75454
TU112043 other upstream 21437 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1469 other upstream 30638 7860222 ~ 7860303 (-) True trnal-aag_32
unassigned_transcript_1472 other upstream 32701 7862285 ~ 7862366 (-) True trnal-uag_2
TU112044 other upstream 54322 7883906 ~ 7885482 (-) False rnasekb
TU112284 other upstream 343765 8173349 ~ 8285918 (-) False G75863

Expression Profile