RNA id: XM_043251170.1


Basic Information

Item Value
RNA id XM_043251170.1
length 2506
RNA type mRNA
GC content 0.46
exon number 8
gene id kcnip1b
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7450917 ~ 7483453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACAGAGCAGTCGGAAACGCTGCAGCAGACCACAGACTTCTCGCCACAACaccacacaacacacaccacacactcacacatgcacacacacacatacagctagAGGAAGAGAGAGGCAGAGGCGTAACCAGGAGAAGCATCGTCAAGGAAAAGGAAAGCCACTCTTTTGTCTCCATGGACACTCAACTTCCTCCAAGCAGTTCTTAGTCCGTGTAGCGCAGCAGCGGGCTCTTGCCATCCGCTTAATAATTCATCAGGTCGGTCTCTGAGCTTTGAGCCTGCAGCGCTCTCCAACTTTTCCCCTCTAACTTTCACAGCAGCAGTCGGCTGTTTCAGCAACTCTCCTTTTATACTTCAAACGGCTGGCACAGAGGCGGTGGAGAACAGGTTCAGGCACTTTGTGAGcatcttgtgtgtgtttgtgcgtgcgtgtgagtgtgtgtgtgtgtgtgtgaggacagTAGGCGAaaggtgtgcgtgtgtgtcatCTGGGCATCCTGCTCGTCTCATTCTTGGACTTGGAACCCATTGTTAAAAGTGCAGTTCTTGTGGGACCGGACGAGCAAGAGGCGGTGTGAGAAGCACTCTGGAGTCCCCCGAGAGGCTCGTATGGGACGTACGCCTCGTCTATGAGCACCGCTGCTGAAAGCAGTGTTTAGGCTGTCGTTAGGGGCTGTCTGCGCTCCCTTGGATTCTCTCTCATCATGGCCGGCTGCACCAGCCGCTGCAGACAGGGGGTGCTAAAGCTCATTCAGTCCCTCCAGAGGCTTGTTTCAGGAACCCTCAGCAAAGATAAGATAGATGACGAATTAGAGATGACGATGGTCTGCCATCGGCCGGAGGGTCTCGAGCAGCTCGAGGCGCAGACAAACTTCACCAAACAAGAGCTACAGGTCCTTTACAGAGGCTTCAAAAACGAGTGTCCAAGTGGAGTGGTGAACGAGGagacatttaaacacatttatgcaCAGTTTTTTCCACATGGAGATGCAAGCACATATGCACATTATCTCTTCCATGCGTTCGACACCAGAAATAACGGATCCATAAAGTTTGAGGACTTTGTGATGGGACTGTCTACTCTCCTGAGGGGGACGGTCAGAGAGAAACTGGAATGGACATTTCATCTCTATGACATTAACAAAGACGGATTTATCAATAAGGAGGAAATGACAGAAATAGTGAGGGCCATCTATGACATGATGGGGAAGTACACGTATCCAGCTTTAAAAGGGGATGTACCAAAGCAGCATGTGGATGCCTTCTTTGAGaaaatggacaaaaacaaaGATGGAGTTGTAACATTGGAGGAGTTTGTACTTGCCTGTCAGGAGGACGAAAACATGATGAGATCCATGCAGCTCTTCGAAAATGTGATGTAGAGAAGCTCCaccagaagaagaaaagaacaaaacagagcGTGGGAAACGGAACGAAgggactttacatttaaatatatatgtgctaTATTTCACTGAGTTCTGGGGGAATATGACGGCATGAGAGGAATGAGAGTCTGTGGGCttactttttctctctctattcaAATCTTTGTAACATATTCAGTGTTGTTTCCCGCTGGTGTTTTGGGAAACTGCCAGCCCAGAATCCACTTTGATCCAGCCACGGAAGACTGCGTATGTTTGAAAGGCATTGTGCATTTCCTGAGTGAGTGGTGATGATCAACATCCTTCTTCCTTACGAAAAACAGAAAGCCACTCTCAAACAGTTTTTCATTTGCTTGACCCTAGAGCTCAGGACTCTACTTTTAGTGTACCGGAACTGCATCCGGGAGGAACGGCAGCCTCCTTTGCTTGCTTTCTTTGCCAGAAGCGCTTGCATGAGAAAAACCAGCAGACGTGTTCCCTATGAGTTGCTTGAAAATAATGCTGGCCCTCAAAATATCGAATTTCGTGATTTATTTATCTCTGCGAGGGGTTTAGAGGTTACTTAATTTGATGTTGATTCTGTCTTGTGTTGTCAGCGCTGTTTGTTAGTAATTGCTGTGTCCAGTCCGCCCACTTAATGTATGTCTACCTGTCTCAGTACTTACCAAGCCATTTATGCCCACCAGATCATAGTGAATAAGGTGGGACTGAAGGTAAAAGTCTGTGTATCCAAGTATGGATGTAAGTGAGGAGTATTAACGAAACTATAGAAACTGTATTCAATCCCAACAAATGACAATCTAGTCCCTGGATCCCCTTCTGTCCCCAGATACCTCTGCACAGTTTCAAGAAGGAGGACTGTATTtgtaagagagaaagagagagagagagcgagaaaataaaaaaaacataaatcacataataaagataaataatagttatttatgGGTCAGGGTCAGTCGTAGGACAAATAAGCTATGTATATACTTGCAAGAATGGTGCCACATGAAGAAATGTCCAATGAGGcagatacaaactgtgaaaatgaaGTATGAGAAATATGCTGTGCAATTCAAATCTCagtcaaaaatgattaaaaacatttgtggaATAACA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111794 lncRNA upstream 42796 7402133 ~ 7408121 (+) True G75516
TU111792 lncRNA upstream 50884 7399428 ~ 7400033 (+) True G75514
TU111791 lncRNA upstream 51554 7398045 ~ 7399363 (+) True G75513
TU111768 lncRNA upstream 84312 7365417 ~ 7366605 (+) True G75498
TU111609 lncRNA upstream 457709 6992839 ~ 6993208 (+) False trpc7a
TU111772 lncRNA downstream 4022 7487475 ~ 7488567 (+) True G75502
TU111884 lncRNA downstream 198701 7682154 ~ 7682440 (+) True G75574
TU111910 lncRNA downstream 322908 7806361 ~ 7834899 (+) True G75583
TU111912 lncRNA downstream 335862 7819315 ~ 7822518 (+) False si:ch211-237l4.6
TU111922 lncRNA downstream 357145 7840598 ~ 7859712 (+) True G75591
XM_043250087.1 mRNA upstream 63923 7381076 ~ 7386994 (+) True hrh2b
XM_043250847.1 mRNA upstream 78984 7362680 ~ 7371933 (+) True LOC122353014
XM_043250848.1 mRNA upstream 78984 7362680 ~ 7371933 (+) False LOC122353014
XM_043250849.1 mRNA upstream 78984 7362680 ~ 7371933 (+) False LOC122353014
XM_043250850.1 mRNA upstream 88379 7361078 ~ 7362538 (+) True cbln17
XM_043250951.1 mRNA downstream 949 7484402 ~ 7487356 (+) True npm1a
XM_043250684.1 mRNA downstream 49735 7533188 ~ 7538271 (+) True LOC122352927
XM_043250814.1 mRNA downstream 131951 7615404 ~ 7681744 (+) True nlgn2b
XM_043250314.1 mRNA downstream 211863 7695316 ~ 7708220 (+) True gigyf1b
XM_043250876.1 mRNA downstream 225720 7709173 ~ 7747396 (+) True efnb3a
TU111766 other upstream 85586 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 193688 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 229389 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 289654 7153586 ~ 7161263 (+) False LOC122352414
XR_006252001.1 other downstream 377793 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 378140 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 378507 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 380326 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 389086 7872539 ~ 7879241 (+) False arrb2a

Expression Profile