RNA id: XM_043251192.1


Basic Information

Item Value
RNA id XM_043251192.1
length 1987
RNA type mRNA
GC content 0.43
exon number 8
gene id car15
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16209748 ~ 16213685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGCACAGTCCGAGAAAAAATCCTGACATCCTACCTCCATTCAAGAAGATCACTACTTAAACCCCCGTTTGCTTTGCattgagtgtttttttgtggCGCGGGACCAGCGGGAACAGTCCGAGAGCGTGATGTTGCTTCTGATGCTGATGTTGATGTCCGTGGTTTCATTGGCAcgcagtgatgatgatgatgACTTCTGCTATGATGAGGAGCACTGTGATCCATATGCATGGGGTGATAGCTACCCCTCTTGCCATCCTCTTCTGGAGAGCCACCACTCTCCCATCAACCTGGATCACCCGCTGACGAAGAACCAGTCTTTAGACTCTCTGCATCTGGAAGGGTTTAACTTGACTCATAAAGGTCAATGGTGGCTGACAAACCAGGGTCACTCCGTTGTGCTGGAGCTGGGTAACGGTATGCAGGTGAGTGGCGGAGGGCTTCCTGGGATCTATCGCACCATCCAGCTGCATTTCCATTGGGGAAGCGTGTCTTCAAACGGTTCTGAACACACCTTGGACCGCCTGAGATTTCCTATGGAGATGCACATAGTCAACATCAAATCCACGCATCCAAATTTGACGTCCGCCCTCGAAGACCCAACTGGCCTTGCTGTGCTTGGAGTCTTCGTCGATGTGACGTATTTGCACAATGAAAATTTCCAGGCCATCTCCAATGCACTTCCTTCTGTCACCTACAAAGGACAAACCAAATCGATCAGACCATTTCCTTTGATAAATCTGTTACCCGAGAACAACCTAACGCAGTATTACCGTTATCACGGCAGCCTCACAACGCCGCCCTGTTCGCAGGTGGTTTTGTGGACCGTGTATGAAGTACCCATTTATATATCATGGGCTCAGTTCGAGCTGTTTGTAAAAGGGATATATTCCACGGAGGAATTAGCCGATAAACAGGTTCACCTGCAGAACAACTACAGACACATCCATCCAACCTACGGTCGGCCTGTGTATGCCTCCAAAGATGCTAAGATGCTCACCAACGGAATTCCCCCTCTTGCCATTTTCAATCTTTTTCAAGTTTGTCTATTTTTTGGCCTTttaaacatttagctttttgaATACTGCAGAACGACAGTCCACTTCAAATACCCGGAAACTACTCGGAAAGCACCACTGGTAGCCACCAGTCTAAAGACCCCTTTACCACAAGAACGGTAACGTTCTCTTGAATATAAGCGACCTGCGATTATGtgtctgtcactttaaatcCTGTGGCTGTTTAAAGATGGCGGATTATGATTGGCTGTCAATAACTGAACGCTTCAACTCgaaaaaagctgaatttgaaCGACTATTATAAACGTAGAATTATTAACGTTAGTTATCTTTAAGGCCCGTTCCCACCAATGGACTCCGATTGGATGTCGTGTCTATCAGCTGGAAATAAATAGTGAATCCAACGATAACGTTCCTCCGTCGTTATCGTTCTTTGATTTGGTCGCCATTTTCCCGGCATTAGAACGAACATTTTTAGTTAAGGTCCTTAAAatgaattgcaattaattgtagTTCACCAAGAACGACTGTGCTACTTATTTGTACGCAGAAACGAATTTTAGTAGCAATTTTGTTCACACATGTATAAACAACCCCATAGCCAGACCGCTATCGGATGAGTGATTTTTCTTAGCGGGACATCCCCTTTTACGTATTTCCCCTCATTCATATTGAACTTGATCACTCAAAGCCTTTTTCCAGTCATACACAAAAGCCACTTCGTGGTATTTAAAATGTACGGTACACTAgaaagattaaataataaaaataattaacggGAGTTTATGACCATATAAAAGCATGCACACCTATGTAGATATATCAAACTTGAACCAGTGAAGATATTCTGTGAAAACGCATACCTCAGGAGACAAACTATTTGATGTACAGTAGCAAAGTTATCGATAGTTTGACTCAAGTGCAAAGTGTTCTTTTACAAATGATAAagtgttgaaataaaaatgg

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251894.1 lncRNA downstream 16208 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA downstream 16208 16189534 ~ 16193540 (-) True LOC122352611
TU115292 lncRNA downstream 16757 16189560 ~ 16192991 (-) False LOC122352611
TU115293 lncRNA downstream 16757 16189560 ~ 16192991 (-) False LOC122352611
TU115297 lncRNA downstream 29853 16178600 ~ 16179895 (-) True G77936
TU115318 lncRNA upstream 31970 16245655 ~ 16252193 (-) True G77947
XR_006251885.1 lncRNA upstream 32968 16246653 ~ 16249749 (-) True LOC122352562
TU115371 lncRNA upstream 137712 16351397 ~ 16353048 (-) True G77979
TU115372 lncRNA upstream 160535 16374220 ~ 16379551 (-) True G77980
TU115407 lncRNA upstream 180529 16394214 ~ 16395645 (-) True G78010
XM_043250444.1 mRNA downstream 21788 16183854 ~ 16187960 (-) True rhof
XM_043249902.1 mRNA downstream 32637 16173751 ~ 16177111 (-) False morn3
XM_043249898.1 mRNA downstream 39934 16146436 ~ 16169814 (-) True LOC122352490
XM_043249899.1 mRNA downstream 44167 16146436 ~ 16165581 (-) False LOC122352490
XM_043250855.1 mRNA downstream 114392 16081970 ~ 16095356 (-) True ggt1b
XM_043250866.1 mRNA upstream 3341 16217026 ~ 16227175 (-) True dgcr2
XM_043250243.1 mRNA upstream 13634 16227319 ~ 16232580 (-) True ess2
XM_043250244.1 mRNA upstream 19061 16232746 ~ 16239069 (-) True stambpa
XM_043250245.1 mRNA upstream 26491 16240176 ~ 16244033 (-) True dusp11
XM_043250246.1 mRNA upstream 26491 16240176 ~ 16244024 (-) False dusp11
unassigned_transcript_1474 other downstream 90726 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 90892 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 152441 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 191978 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 312650 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile