RNA id: XR_006251889.1


Basic Information

Item Value
RNA id XR_006251889.1
length 377
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id LOC122352573
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15831207 ~ 15831926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGAAGTTCACCGTTCAAGTCATACCATGGCACACCAGAGTACTCTCCTCCTGAGTACCACCGCAGGGGAGAGTACCAAGGCTGGCCGGCGACGGTCTGGTCACTAGGGATTGTAATGTTCACATTGTTGTGTGGAGATTTCCCTAGTTACCAGGACCTGCTCCTGCTGGAGCACAACAAGTGGTCCAAACCTGGCCTGTCACAGGAATGCTGTGACTTACTAAGGGTTCTTCTCCACGAGAAGCCAATCCGGCGACTTGGTCTGGGGCAAATCAGGTCCCACAACTGGTTTATGgtCGTCTTATAGGACCACTCCGGTTGGCGCCTCTCTTGCAGCTTTGCGTCTTGCGGGCTGCAGCGGGAGGTGCTTTCATC

Function

GO:

id name namespace
GO:0021546 rhombomere development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251906.1 lncRNA downstream 3651 15827084 ~ 15827556 (-) True LOC122352661
TU114936 lncRNA downstream 183344 15644403 ~ 15647863 (-) True G77715
TU114914 lncRNA downstream 436655 15392088 ~ 15394552 (-) True G77706
TU114911 lncRNA downstream 462531 15368401 ~ 15368676 (-) True G77703
TU114908 lncRNA downstream 483918 15345000 ~ 15347289 (-) True G77700
XR_006251904.1 lncRNA upstream 7587 15839513 ~ 15840066 (-) True LOC122352641
XR_006251891.1 lncRNA upstream 8425 15840351 ~ 15842537 (-) True LOC122352598
XR_006251965.1 lncRNA upstream 70961 15902887 ~ 15912782 (-) True LOC122353197
XR_006251966.1 lncRNA upstream 83122 15915048 ~ 15917942 (-) True LOC122353198
TU115104 lncRNA upstream 88995 15920921 ~ 15921360 (-) True G77827
XM_043251210.1 mRNA downstream 9220 15820992 ~ 15821987 (-) True LOC122353239
XM_043250956.1 mRNA downstream 22150 15805107 ~ 15809057 (-) True LOC122353102
XM_043251122.1 mRNA downstream 30443 15799790 ~ 15800764 (-) True LOC122353177
XM_043249782.1 mRNA downstream 33671 15796544 ~ 15797536 (-) True LOC122352370
XM_043251166.1 mRNA downstream 56334 15773887 ~ 15774873 (-) True LOC122353203
XM_043251162.1 mRNA upstream 3170 15835096 ~ 15838380 (-) True LOC122353200
XM_043249875.1 mRNA upstream 15863 15847789 ~ 15849992 (-) True LOC122352473
XM_043250587.1 mRNA upstream 30251 15862177 ~ 15864530 (-) True pcna
XM_043250879.1 mRNA upstream 40564 15872490 ~ 15890490 (-) False bmp1b
XM_043250878.1 mRNA upstream 40564 15872490 ~ 15890490 (-) True bmp1b
TU114910 other downstream 472975 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 541535 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 723455 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1241308 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 1345937 14484817 ~ 14485270 (-) False im:6904045
TU115089 other upstream 61757 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 184745 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 198601 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 286860 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 287026 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile