RNA id: XR_006251905.1


Basic Information

Item Value
RNA id XR_006251905.1
length 358
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC122352660
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6186147 ~ 6190440 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGTATAGCAGTGAGTTCAGCCTTCTGTCCGTCTGCGGCGCTCCTCCTGAGGTGTTACTCCCTTGTGTTAGTGAACCGCTGCTCCTCAAGTGGCTCCGCTGGAGGATTCGGGCCCCGATGACTCACGCCATCTGTTAGCAGCTCTTGTACGATCACACTTCTGTGTTCCTTCCAATAAACAGAAAGAGCCAGTGATTTTGCAGAGATGCTTTGATGGTCCAGAGAAACACTCTACAGAAGAACCCACAGAAAGCGCTACCACCGATGTCCAAAACATTACAAAGttctccTTTCACTGTCCTCTCAGTCGGAGCACCTCATCTCTTTTTGTCACCCTCTTGGATGTCTCTCTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111146 lncRNA upstream 210589 5942274 ~ 5975558 (+) False G75102
TU111145 lncRNA upstream 240451 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 278620 5907179 ~ 5907527 (+) True G75097
TU111124 lncRNA upstream 464120 5663157 ~ 5722027 (+) True G75083
TU111119 lncRNA upstream 523072 5657359 ~ 5663075 (+) True G75081
TU111367 lncRNA downstream 351648 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 387732 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 453596 6644036 ~ 6650405 (+) True G75361
TU111558 lncRNA downstream 453596 6644036 ~ 6655910 (+) False G75361
TU111573 lncRNA downstream 544492 6734932 ~ 6759645 (+) True G75371
XM_043249823.1 mRNA upstream 30418 6154560 ~ 6155729 (+) True LOC122352406
XM_043249822.1 mRNA upstream 31739 6148020 ~ 6154408 (+) True LOC122352405
XM_043250188.1 mRNA upstream 38283 6139988 ~ 6147864 (+) True atp6v1b2
XM_043250530.1 mRNA upstream 46512 6132089 ~ 6139635 (+) True vsig8a
XM_043251165.1 mRNA upstream 96560 6061191 ~ 6089587 (+) False lrrtm4l1
XM_043249825.1 mRNA downstream 85280 6275720 ~ 6277124 (+) True LOC122352409
XM_043251205.1 mRNA downstream 173174 6363614 ~ 6395638 (+) False xpo7
XM_043251206.1 mRNA downstream 173174 6363614 ~ 6382449 (+) True xpo7
XM_043251207.1 mRNA downstream 175814 6366254 ~ 6395638 (+) False xpo7
XM_043251208.1 mRNA downstream 195078 6385518 ~ 6405231 (+) True dmtn
XR_006251967.1 other upstream 96560 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 624062 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 685843 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 927324 5256838 ~ 5258823 (+) True G74965
TU110925 other upstream 936010 5244590 ~ 5250137 (+) True LOC122352567
TU111380 other downstream 263896 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 951853 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 963146 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 963146 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 1018095 7208535 ~ 7221528 (+) False LOC122353118

Expression Profile