RNA id: XR_006251929.1


Basic Information

Item Value
RNA id XR_006251929.1
length 2706
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC122352841
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13548254 ~ 13556657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagattaaatgaaaaataagagaaaacagTGAACACCTTCCACGTTTATGGCGCATGGTGCAGAGCACTGATAACGTACGTCTAATGCTGACAAACAAAACGACCAGAATACAGCGTCGCTAAAGCCTCAAAATCAAACCTGTCATGGCGATGACACTGTTGATCTCTGTGAGGAGATGCTACAGATCTCCATGTTGGTGAAGGAGCTCCCGGCCTCGCTGCCGCATTCTGGGTACGAAGAGCTGGAGGAAATGATGTTCTTCAGCCTGTGGAGAGCAATGATCAGCAGGGCAACCTGCGTATCGGTGGGCTTGTGAGCTGGTGCGGGTTGTTGATAGGCCACCGACGGTCCATTAGGACTTTGGGGTGGTCACATCGGCTCAGTGGTGCACACAGAAGGTGAAATAGAAAAAGGTGCCGAAAGAAGGTTGCTAAGataataaaaagAGAGTCTGGAGCGGACTGGCATATGGATGGAGCTTGGGATGCAAGCGCTGGGGCAGAGCTATGCATGTCAATAGGACCGAGGCGCCATGCCTCCTGGGAAGGTCTTATCTCTTCTGCTCTGTGCACTGAAGACACGGAACACAAGCTTATGGATCAACTCAAAGCAAAACATGACTGTCTCTTCTGTTATTTTGTATCATGGGAATTTTGTTTCAGTATTAATGAAAGCTAGCTAGCATTCTTACTCATTGATCACCAGTGATTTATCTTGGAGCAGTAGAATACTCTCTGTTcctcttaaaggtacagttcactAAAcatgaaattctgtcatcatttattcacccttgagtcatttcaaaactgtttttgtctATGCAGGTCAGTAAGGTCCAATACAAGGTGTGTAACAATAAGGTACATAAAAAACTGTGcaatttactgttaaaaaaacaagctaTGGTTACCAGACTTATTTCCATAAAGATATGCTGGaaactattttgttttacattttaagcttAAGTTTTAAGTATATTCAAAGGGTGCATTGtctttgttataaaaatattttccattgtttcaaacctttttgttttgtgttccacagaagaaagaaattcatatgaaatgagggtgagtaaataatgaccgaacatttttggctgaactaccTCTTTAACATTCATCTGAGTATTCACTCTCTTCATAACATGTGCAAGGACAGGAGAGGGCAATTTCTGCCTCTAGACGTATATTGGCGGCGTTCCACTGTCAGCTCAGTTGCCCACTGGGGACCATTGGTACCCTTCCTGAGTCCTGCTGTGTCTGATCCTGTCCTTTGGGTCTTTATAATTGCACCAGCTAATGCCGGCGCTGAGGCACATGAGTAAATGCTGTTGGATTTTGATAAGAACAGTGCCTTGGCTGATTTTTCCTCTAATCCGTGGAAACTGTAAAAATCAGAGAAGGTTTCTTATTCCCTTGATGCAAGCGATTCAACCAGCTTTGGTGCATCTATTCCCTGCACTCAAGTAGGTCGAATGTTAACGCATGGCATTCGGAGGCAAGGCCGTCTGAAGCATTTTTCATTAGACTGTGAGCTAACTTGAGGGGGAATGGGTCGCATTGATAATGAATCATCCGCTCACCCTGAGTCTGCTCTACTGATTTTGACAAGAATGTCATGTTTGAAGAAGCTTTGTGGCAGACAACAGCAATGTGTCACTCAGGATTATCCTGTGGAATTCTCTAGGCACTATGGGAAGGTTTACACAGTGAAGCATGTCAGAGTCGGAGAGCACActcttctctctttctatttcccgttttccattttatttcccTGCTGAAATGATGCTCTTTGCATAGCAATCCAAATCTCAGAGGTCTCTGTATTTCTCTGACAGCTCAGACAGAGTCACCTTCTAGTGGTCTAGCAGCTGCCAGCATATCAGGCACACTTGTACATTTATAGACACTGatatggattttaaataaaagaaacacaaaaaatgtacaaaacatttcatagataaatgtgtatttaataatttggcTTACATTTCTGGATAAAGGGATGGATATGAAACAAGGCTAActgtcattatatttatttttattttaaaaccttttaaaagtttaatgcAGGCATGCACATGAATCATGTACTTGTAtaagttttgagttcatttaattaaaaagtctaaaaagttgtttttcttaGAGAAGTTGTAGGCTTCGAACTTgaaaacttaataataaaaagttaatgtaATGGTCATTTAAATTGCATGTTAAAGAACTTACATATCGTGCCAAAATAGCAAgacatatatttgatattatttatcaatcatttaatttaaaactttaatttttgtCAGTAAAAAGGCCTTTTTCTCAGAGAAAGTATGAAAATACCAAGAAAGATTCTAATTTAAATAGataaattgtttcatttaattggaTTAAATATAAAGTGCCCTTCACAATTATTGGCATCCTTGCTTAAGGTCGTGGActtctaaaaacaaaatcatgtgTCCcgcaattattggcacccctaacAAGCTCACTGTCACAGAATGCATCCAAGGGTGGCATCTTGGGGTCTCCATAACAACCATCAGACGCTCTCTACATGCCAACAAGCTGTTTGGGAGGCATGCAAAGAAAAAGCCTGGAGTTTGCTAAGTGGTACTGGGACTTTAACTGGGAACCTGGGAACCTTGTTAGGGGACATGGCATTATAAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114305 lncRNA downstream 42405 13500803 ~ 13505849 (-) False dclk1a
TU114322 lncRNA downstream 59421 13486267 ~ 13488833 (-) True G77284
TU114273 lncRNA downstream 219361 13328642 ~ 13328893 (-) True G77245
TU114244 lncRNA downstream 232680 13313194 ~ 13315574 (-) True G77220
TU114230 lncRNA downstream 337308 13210616 ~ 13210946 (-) True G77208
TU114360 lncRNA upstream 113315 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 234664 13791321 ~ 13791934 (-) True G77349
TU114402 lncRNA upstream 243356 13800013 ~ 13800912 (-) True G77347
TU114407 lncRNA upstream 247826 13804483 ~ 13804892 (-) True G77351
TU114408 lncRNA upstream 248432 13805089 ~ 13805329 (-) True G77352
XM_043249960.1 mRNA downstream 1931 13544044 ~ 13546323 (-) True ccna1
XM_043249961.1 mRNA downstream 1941 13544044 ~ 13546313 (-) False ccna1
XM_043250606.1 mRNA downstream 4639 13538156 ~ 13543615 (-) True sparta
XM_043250608.1 mRNA downstream 10286 13533751 ~ 13537968 (-) False ccdc169
XM_043250607.1 mRNA downstream 10286 13533751 ~ 13537968 (-) True ccdc169
XM_043250540.1 mRNA upstream 1821 13558478 ~ 13565616 (-) True smad9
XM_043250539.1 mRNA upstream 1821 13558478 ~ 13565613 (-) False smad9
XM_043250538.1 mRNA upstream 1821 13558478 ~ 13565613 (-) False smad9
XM_043250522.1 mRNA upstream 9887 13566544 ~ 13571292 (-) True alg5
XM_043250515.1 mRNA upstream 17774 13574431 ~ 13588126 (-) False supt20
XR_006251934.1 other downstream 4639 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 759164 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 2343028 11176569 ~ 11205226 (-) False LOC122352715
TU114352 other upstream 86634 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 249462 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 645605 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 645605 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 647759 14204416 ~ 14208006 (-) True G77441

Expression Profile