RNA id: XR_006252002.1


Basic Information

Item Value
RNA id XR_006252002.1
length 134
RNA type snoRNA
GC content 0.38
exon number 1
gene id LOC122353466
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7863779 ~ 7863912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCAGTGAGGTACAACCTTACCTGTTACCTTAGAAATAAGGTTTCAGAACATGATGATTGGATTCAATGAATACGTGATTAACTCTCGTGTTCGTTTAGAGTCTTGCAACCTCTTTACGAATCTTATCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111922 lncRNA upstream 4067 7840598 ~ 7859712 (+) True G75591
TU111925 lncRNA upstream 14543 7845219 ~ 7849236 (+) True G75593
TU111910 lncRNA upstream 28880 7806361 ~ 7834899 (+) True G75583
TU111912 lncRNA upstream 41261 7819315 ~ 7822518 (+) False si:ch211-237l4.6
TU111884 lncRNA upstream 181339 7682154 ~ 7682440 (+) True G75574
TU111946 lncRNA downstream 37311 7901223 ~ 7902731 (+) True G75607
TU111975 lncRNA downstream 172222 8036134 ~ 8069911 (+) True G75629
TU112150 lncRNA downstream 301536 8165448 ~ 8165704 (+) True G75766
TU112158 lncRNA downstream 421243 8285155 ~ 8285865 (+) True G75774
TU112188 lncRNA downstream 449649 8313561 ~ 8314122 (+) True G75799
XM_043249958.1 mRNA upstream 41442 7817810 ~ 7822337 (+) True si:ch211-237l4.6
XM_043249980.1 mRNA upstream 46078 7812206 ~ 7817701 (+) True tmem88a
XM_043250347.1 mRNA upstream 53696 7790198 ~ 7810083 (+) False kdm6bb
XM_043249932.1 mRNA downstream 2423 7866335 ~ 7871448 (+) False ap4m1
XM_043249931.1 mRNA downstream 2426 7866338 ~ 7871448 (+) True ap4m1
XM_043250066.1 mRNA downstream 8627 7872539 ~ 7880100 (+) True arrb2a
XM_043250067.1 mRNA downstream 8627 7872539 ~ 7880100 (+) False arrb2a
XM_043250069.1 mRNA downstream 8627 7872539 ~ 7878636 (+) False arrb2a
unassigned_transcript_1471 other upstream 1746 7861960 ~ 7862033 (+) True trnat-agu_2
unassigned_transcript_1470 other upstream 2105 7861593 ~ 7861674 (+) True trnas-gcu_13
XR_006252001.1 other upstream 2400 7861246 ~ 7861379 (+) True LOC122353465
TU111766 other upstream 498448 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 606550 7243267 ~ 7257229 (+) False LOC122353118
XR_006251892.1 other downstream 8627 7872539 ~ 7879241 (+) False arrb2a
TU112127 other downstream 237564 8101476 ~ 8102924 (+) True G75750
TU112216 other downstream 716387 8580299 ~ 8581102 (+) False LOC122352912
TU112405 other downstream 849291 8713203 ~ 8716277 (+) True G75935
TU112407 other downstream 869867 8733779 ~ 8734996 (+) True G75937

Expression Profile