RNA id: XM_043252497.1


Basic Information

Item Value
RNA id XM_043252497.1
length 1616
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC122354324
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 322213 ~ 329039 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCCGGTGACGCAGGCGTGACGCAGCGCGGATGTCCCAGAATGCCGCTGTCTGCCAGCGCAGCACCGATCGATGGTCAGGCCGGTGTTTCAACGCGTTAAACGGTAGAGATCAGCCGGTGGTCGAAACGCTTGGTCTCGGTGGAAATCGTTTGAAGTGACTGTTGATGAGTGAATGAGATCCGCGTGAAGAGagaccatcatcatcatcatcctcctcctcctcctcagagcCGAAGACAAACCCAGCAGGAGCGATGGCGAGTCCCAGAACCAGACGAGTGCTGAAGGAGGTCCGGTCCGACGACGAGAACAAtgtgtgcTTCGAGTACGGAGCGTTTAATCCTCAGTGGGTCAGTGTGACGTACGGGATCTGGATCTGTCTGGAGTGTTCGGGCAAACACAGGGGCCTCGGTGTGTCTGATGATCATAAACTCTGTTTATCTCCTCGTAGCTTTGTGCGGTCTGTGTCGATGGACAAGTGGAAGGACCTGGAGCTGGAGAAGATGAAGGTCGGAGGAAACAGGAAGTTCCGTATGTTCCTGGAGCTGCAGGACGACTACGACCCCAGCTGGAGCCTGCAGGAGAAATACAACAGCAAAGCCGCTGCGCTCTTCAGAGACAAGGTGGTGACTCAGGCCGAAGGGAAGGAGTGGACGATGGAGAACTCTCCCGCCAGGAACTGGACTCCTCCGCAGGCCAAGAGCGGCCTGAGTGCTGCGCACCGGTCCAGTGCCGCTGCGGGTCAGAACCACACGCACTCCTCGGACAAGGCCTTCGAGGACTGGCTGAGCGACGACGTCAACTCCTACCAGAACGCCGGAGCGACCGGGGCGCAGGAGAATAGATGTGGGTTTGGAAACACTCCCAACCCGCCCAAGAAAGATGAGGACTTTGTGAACAACGCCATGTCCTCCATCTACTCGGGCTGGAGCAGCTTCACCGTGGGAGCCAGTAAGTTTGCTTCGGTCGCTAAAGACAGTACCACTAAACTGGCCAACCAAGCGACTCTGAAGGTACTTACGGGCTATAAACCACCGCCAGAGCCATGCCACCAGCTGGGACAGACGCTGAATGACAGTGTGATCAAGCCCACACAGGAGAAGGTGAAGGAGGGAAAGTTGTTTGATGAAATGGCCGTGGGCATCAGCGGTCTGGCCACCAAGGTACGAGGCGGCTCGCGCTCGTCTGACGTGATCAGACGGAAAcctctgctctttctctctctcaactcacttttctttctctttttgtgctGCCGCTGTGATTACGGTGGTGAGTACGATGATTTAGATGTAATGAAGACTCTGGAAATCGGGCAGTGTTCAGGAGCAGGAGCTAAAGGCTGGAAGGACATGACCTCGCTTCTTCGTTCTGCTTTACTGAGGAAGGATATCAGAACCAGGGGCAAGCGGGACTTCTGGGAAACCTTCGGTAGTAACACGGCTCTCAGCAGCAACTCTGTAGAGCGAGGCTCAGAAGATCAGTCCAACAACAAGAAGAATGCTGCAGACAGCTGGGAGACCTGGGACAACGACTGGGAGAAGGCTGAGACGGCAAGACAGGAAGAGCCTGTCGAAGCCGGCCGAGGACTCTTGGACAACAGCGGCTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115606 lncRNA downstream 18995 160995 ~ 303218 (-) True G78132
TU115652 lncRNA downstream 49249 271740 ~ 272964 (-) True G78150
TU115651 lncRNA downstream 50856 270980 ~ 271357 (-) True G78149
TU115633 lncRNA downstream 84314 237488 ~ 237899 (-) True G78140
TU115567 lncRNA downstream 253944 67765 ~ 68269 (-) True G78109
TU115663 lncRNA upstream 74094 403133 ~ 404980 (-) False LOC122353669
TU115664 lncRNA upstream 74207 403246 ~ 404980 (-) False LOC122353669
TU115670 lncRNA upstream 101955 430994 ~ 431422 (-) True G78162
TU115673 lncRNA upstream 102648 431687 ~ 438660 (-) True G78164
TU115642 lncRNA upstream 114846 443885 ~ 448901 (-) True G78144
XM_043251864.1 mRNA downstream 31863 289980 ~ 290350 (-) True LOC122353956
XM_043251860.1 mRNA downstream 33268 282263 ~ 288945 (-) True LOC122353949
XM_043252496.1 mRNA downstream 41646 274866 ~ 280567 (-) True LOC122354323
XM_043251862.1 mRNA downstream 96382 217174 ~ 225831 (-) True LOC122353952
XM_043251861.1 mRNA downstream 135362 179559 ~ 186851 (-) True LOC122353951
XM_043252498.1 mRNA upstream 10056 339095 ~ 346418 (-) True cdk4
XM_043252492.1 mRNA upstream 38807 367846 ~ 372472 (-) True tegt
XM_043251510.1 mRNA upstream 45121 374160 ~ 385324 (-) True avil
XM_043252461.1 mRNA upstream 56995 386034 ~ 394186 (-) True si:ch1073-456m8.1
XM_043251542.1 mRNA upstream 73901 402940 ~ 405411 (-) True LOC122353669
XR_006252075.1 other downstream 33267 282263 ~ 288946 (-) False LOC122353949
TU115653 other downstream 41636 279995 ~ 280577 (-) False LOC122354323
TU115630 other downstream 96401 218386 ~ 225812 (-) False LOC122353952
TU115639 other upstream 114846 443885 ~ 448901 (-) False G78144
TU115640 other upstream 114846 443885 ~ 448901 (-) False G78144
TU115643 other upstream 114846 443885 ~ 448901 (-) False G78144
TU115685 other upstream 124095 453134 ~ 455998 (-) True G78170
TU115720 other upstream 370904 699943 ~ 775965 (-) False G78195

Expression Profile