RNA id: TU115642


Basic Information

Item Value
RNA id TU115642
length 4977
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G78144
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 443885 ~ 448901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATCTCTTTAATCAGAGTTCTCCTGTCAGTACTGAACCGGTGAGTTTCTTTGAGGAAGTCTATTCTCCCAGACCTAGTTTCAAATCAAAGTCGTTTCATTTATTAGCTTCCACGCTAGTTTTCTCAGAAACCTGCGTCCTCATATTAGGAAGTGACTGACAGAAACTCTTTTAGTCACGATGTTGAGCTGTTCCTCTTTTTAGACAGCGCTGCATGACGATCTCGtctggcgtgtgtgtgtgtgtgtgtgagagagagagtgacccACATCACACACACCCGTTTCTGCTCGTTACACATGAGCCGTTACCGGAGCAGCACAGATCCAGGTCAGTGTGCCAGCTTCACAGCGGCCTTTCCccaaacacagagacagagagagtgtgtgcgtgtgttatcAGTTTATTATTACAGCCATACACAGACTACAGACCCATCCAGTCAACCAGAcgtctataaatataaaatatttcagatttactCTCATCAAAGCACGTAGATACGGGTCTGGAGCGCTctagaggtgtgtgtgagggtcAGGCGCAGGCGGAGATGGGCTGGCTCAGGCCGCTGAAGAACgacttctctctctcgctcatcAGCTGGAAGTGAAGCGGCTGCCGGCAGAAGTTACACTCGGCCGAGGAGTGAGCCTTCAGCTCCAGACCCACCTCCTTCCAGGCCTGGGTCAGCTtctctgtgacacacacacacacacactgttatcACAGATCACACCAGAGCTTGTGTTCATATGAAAACTACTACATCAGAATCTCATATCGCTAATGAATTTTCACTAAAGTTCACGTCTCAGCTGGACCACCATACAGACTATATGAAAGCAGACACTGGTCTTCAGGATGATGCGAGATGTTGGTGTTGATTCAGAGACTCACCCACGAAGTAGCTCATCATCTGAGGCGTGTGGTGCGGCGTGGGAGCGATGCGGAGCAGCTCCTCTCCTCGAGACACCGTGGGGTAGTTGATGGCCTGCACGTAGATGTTGAAGCGGCTCATCATGATGTCACACACCTGTGTGTTCTTCTCCGCGTCCGCCACctgagcgcgcacacacacacacacacagtataacTACACGCTACATGTACTTGTGTTCAGGGCTTGGCTCAGGCTGACTAGCATGTAATTCTACATCATTAGTAATCACACAtaactctctgtgtgtgtgtgtgtgctcacccGCACGGGGATGATGTGGCTGGGGCAGTGCACCACGGGCAGGCCGGTGTCCAGCAGCATCTGTCTCAGCAGCTTGACGTTGCGCTGGTGTTTGCGGCGCAGGGAGCGGCCCTCCTCGCTCTTCAGGACCTGGACGGACTGGCGAGCGCCGGACAGCAGCATGGGCGGCAGAGACGTGGTGAAGATGAAGCCTGCGGCGTACGAGCGCACCGTGTCCACCAGAGCGTGAGTGCTGGCGATGTAGCCTCCCACACAGCCGAACGCCttccctacacacacacatcatcatcaggCTTGGAGGGTGATTGTCAAAACAGACCGGGATTAATCAAAAATCTGATCACCAGAGGCTTTAGAGTGGAGAAttaacgcaaaaaaaaaaaaaataaaaagttaacaaatatgaaaaatactaAAAGACAAAAGGGCAACATTATTTTAAGTAcaatacataatgcataattagTTCAGATACATGTAATGTGTGAATCAGACTCTAATCCTAACTACATGACATTGTGCACGTCTGCAATCTCTGAGGaacatgaaagaagaaagaaaagatttaACATCCCGCCCTCAATATTTGTTAAGAAGAATTAAGTTGTGGTGCACTACACACTAGATTCTGAAAGGATTCATGAGGAAGCAGCACAGTTGTGATTGTAATCAGTTCAGGTGTCAGGTGACAGGAACAAACAGGTCTGGTTGGCTGGCGTTCTCCAGCAGCTGTACGTGACTGAAGACTCGTCTCCTCGGggggagcgtgtgtgtgtgtgtgtgtgtgtgagagagaggactCACCCAGAGTTCCAGAGATGATGTCCATCTTGTGCATGACTCCGTCTCGGTCCCCGATGCCTCCTCCTCGGGGCCCATAGAGCCCCACAGCATGCACCTCATCCACGAAGGTGATGGCCCCGAACTCATGAGCCACGTCACACATCTGCTCGAGCGGACACACGGCGCCTGCGACACACGGgtcggggtcagaggtcagacgGGTCGGGGGTCAGATCTGATCACACAGAGCCTCCACTCACCGTCCATCGAGTGCACCGTCTCAAACGCCACGATCTTGGGAACGGAGGGATCTGATTTCTCCAGCAGCTCACGTAGATGCATGGCGTCATTGTGGCGGAAGATAAACTTCTTGGCGCCGCTGTTCCTGATGCCCTGGATCATTGAGGCGTGATTGCCCGCGTCTGAATAGATCTCACAACCTGAGGAGAGAGAACAGAAGAGCTGCTCTCAGAAACCAGAGCGCGCCGAGAGAAGGGATAAAGACCCTTTACAGTCAGAGGTTCTTCTCAGGCTGAGGTTCTTAAATTCATTTACGAGTTTATTTCTCCACACTATAGTTTTAAgtctttcaattaaattttttctgGTCTCCTTTgtagtaattaatttttttgtctgtttaaaaagcacatctaattaaattaaaaccacGAAACTCAACCAAAATGACATCTTAAGGGCCCTGTGAAGCATTTTATTTCTCCTCAActcaatttttttactttattttctgaCAATTTTTTCTCTCAGAATTTGTTGTGCATATAATCTGTTTAGCAAATGAAGACAAAACATTAACGCCTCctaattattaaaacttaaactttattattaggCGAGCTAAAGGCTTAACTTAAGATTAAAACATGACAGTGTGACATGATTGTGCAGTTGAACCCATTCTGAGGAGTTTCTGGATTTAGTGACAGTAGTTGGTAGTTATTATATTCATAATCACACGCTGCAGTAAACATTCAGAGACACGcaggattcatatttaaatattgatgcagcttaatatttacacacactcgTCCAGACGGTGAATTAATACACACGTAAAGACGTGCTTTAATTAACGCATCTGACGTTTGAGAGACATTGAGAGTTAATCAGTAAACTCTGGGTGTTTTCTGCTTCACTGAAACGTCATCAGAACAGGAAAGAGTAATAATCACCAGGCAGCATCTTAGCGAGCGTGAAGAGCGTGGAGTCATTGGCCACGAAGCACGAGGTGAAGAGCAAGGCGGCGTCCTTCCCGTGGAGATCGGCCAGCTCGTGCTCCAGATCCACGTGAAACTTACTCGTGCCCGATATATTCCGAGTGCCTCCGGCCCCAGAGCCGTGTTTCTCTAAAGTGCCCCTGTCAAAAGACATCAGAGACGCTGGCGTCAGCCCGAGAGCACTGTATTCGAGTCACAGATCTAGTTCGTGAACGGATCTGCTCACATTATGGTCTGCACCACCCGCGGGTGGCGGCTCATGCCCAGGTAGTCGTTGCTGCACCACACGGACACGCTCCTCTTGAAGGACAGAGACTCGGTGTAGTCGTCGGCCATCGGGAACTCCGTCGCCCTGCGGTTCACCGTCTTGAACACGCGGTACGTGTGATCCTCCTTCTTCTCCTCGATCTTCTTCTCGAAGAACTCGTCGTAGCGAAAGTTGGAGACGGCTGCAAGAGAAGAGCGAGCGTGAAGCCATTTTCAAAATAGGAAGTGGTTTGCTGCGGGAGTTTCTTCACGGTGACGCAACACACCTTTAGGCATGTTCTCCTGCAGCAGATGAGAGACCCTCGTGGGCCGCTGCTTCATCAGCTTCTTCATCAGGTTCCCTCCCATCTTGGTGTCCTTCACCAAAGGATTGAGCTCCGAGGCAGAGACGTCTGGAAAACAGAGACAGACGGACGGCGGTTGGATTAGAGACGGGCTAGTTTTAAAGCATCTTAAGAGGCGTGTAGGTTGCTAGGCAATTTACTGAAGGAGGTCAAATAAAGCCCATCTGGTGAAGCTGCGTGATTAAAAACAGGAAGCATCTCAAAAAGTCATCCTGCGTTTGGAAACCATACCCCAAACATCTCACTACACTCTTCAGGAGAAGCATTGATCAACAGACGAGGCACGGTTTAATGTTGGAAAATGAAACTATGACAGccataaatcatttttcattagtaaaattttcatattttagtagTAACTATTGTTCTTAACACTATTTGTAAATTTGtaacaaagtaaaaacatttattatttttataaattatatattttattacaaattacgTTTTCTTAGTCCACCccccacatttttaaaactttaaaatgtatcattaataAACTTATtgacaatttttctttttaaacaatattttatgcaCTTTCCTTATTACTTTTTTAGCACTTTATTTACGGTTCCATTGGATTTTACCATTATGTTGTAATTTTACGTCTGACCAAACAGTTTTGTAAACATTACTTAATAACCCTGAGACACAGTAAACCACAGCGGAGCCACTTCCTCACTAACCTTTGCACACGGTGCGAACTTCAGAGACGTCTTCCTGAAGAGCCATGCTGGCCTGCCGCACCACGCCGCTGTTCCCCGTCTCCATCTCGGCCGCCAGGAACGGGCACCTGGAGGCGGACGCCTGGCCCGCGGGCACTCGGGACGCCACTTTGGCTTCTAACGCAAAGAGAGAAGACACTCTTCAGCAAGGCAAGCGAGGCACTGAAGCCGAGCGGACGACAGACACTGACCGTCTCCGGCCGGAGGAGTGCTCTCCATCTTCTGGAAGCTGGAGGACGAGGAGCAGAGCGAGCGCACCGGCGGCTTGGACGCCAGGTCCATCATGACGGGACACTTCACGGCGTACGCCACCAGGGACTTTCTGGCCTGCTGCAGGAACGTCTGAGGGACGCGAGACAGGAACGGGCAGCGGATGATGGCATCCATGGCTGATTGTCCGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115673 lncRNA downstream 5225 431687 ~ 438660 (-) True G78164
TU115670 lncRNA downstream 12463 430994 ~ 431422 (-) True G78162
TU115663 lncRNA downstream 38905 403133 ~ 404980 (-) False LOC122353669
TU115664 lncRNA downstream 38905 403246 ~ 404980 (-) False LOC122353669
TU115623 lncRNA downstream 118929 324198 ~ 324956 (-) False LOC122354324
TU115678 lncRNA upstream 9392 458293 ~ 506641 (-) False G78167
TU115679 lncRNA upstream 55225 504126 ~ 506641 (-) True G78167
TU115709 lncRNA upstream 143714 592615 ~ 594641 (-) True G78192
TU115721 lncRNA upstream 150206 599107 ~ 775965 (-) False G78195
XR_006252069.1 lncRNA upstream 270374 719275 ~ 721631 (-) True LOC122353904
XM_043251541.1 mRNA downstream 18220 414402 ~ 425665 (-) True mettl1
XM_043251540.1 mRNA downstream 31300 406021 ~ 412585 (-) True LOC122353667
XM_043251542.1 mRNA downstream 38474 402940 ~ 405411 (-) True LOC122353669
XM_043252461.1 mRNA downstream 49699 386034 ~ 394186 (-) True si:ch1073-456m8.1
XM_043251510.1 mRNA downstream 58561 374160 ~ 385324 (-) True avil
XM_043251608.1 mRNA upstream 462774 911675 ~ 933876 (-) False vgll4b
XM_043251609.1 mRNA upstream 462774 911675 ~ 925758 (-) True vgll4b
XM_043251605.1 mRNA upstream 484951 933852 ~ 939272 (-) True tamm41
XM_043251604.1 mRNA upstream 484951 933852 ~ 939267 (-) False tamm41
XM_043251607.1 mRNA upstream 484951 933852 ~ 939103 (-) False tamm41
XR_006252075.1 other downstream 154939 282263 ~ 288946 (-) False LOC122353949
TU115653 other downstream 163308 279995 ~ 280577 (-) False LOC122354323
TU115630 other downstream 218073 218386 ~ 225812 (-) False LOC122353952
TU115685 other upstream 4233 453134 ~ 455998 (-) True G78170
TU115720 other upstream 251042 699943 ~ 775965 (-) False G78195
TU115722 other upstream 251042 699943 ~ 775965 (-) False G78195
TU115726 other upstream 251042 699943 ~ 775965 (-) False G78195
unassigned_transcript_1475 other upstream 657444 1106345 ~ 1106416 (-) True trnac-gca_5

Expression Profile