RNA id: TU115673


Basic Information

Item Value
RNA id TU115673
length 1604
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G78164
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 431687 ~ 438660 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTTATTACATACCTACACAATagcaataatttattcatgatcttatttaaatgttccTTTCAGTCATTAATCAGGTGTTAcacagcattaaaaacaaatcactgcAGGTTGAAGAAACATCTCAACATCATATAAACTactgaaacattacattttattttaactgtcaCTTTAGTTATTTTATCACGGAAGACGTTTCctttcaaacacattaaaatgcaccctttttatcatctgatcctctttaaaactcttcaaTTGTTTAACATCTGAATGATTTTGATTACACTCATAAACCTGAACTTTATGTGATTGAtgacaataaatgaatatattttcttgttctctgtattttaatatcaatatgGTACAAGATTATCCTCTTTAAATCAATGTGGAAAAACGAGATACAGGtcataagtaataataaatagtgaCTATCACCTCACCGTGTAACGTATTATTACTAGTGAACACTTAGAAGAGCTCGAGATGTACTGAAACACTATTAAACTTAAGAAGAAAGCACTTGTTCAGCTGGGCTAATATTTGATTAGTTTCTCCTCGATCCTCAGATACTGTTTGTTTCtgtcacattaaaacatttgataCTTCATGATGACATTTTGGGCTTTTATTAATGTGTACAGTGTGTCCAGACTCAGTTCATCAAGTATATAAGGTTcatgtcttaaaacaaatacatctcTCTCAGCTGAAAGACTTTGGGAATGTGTTTCAGATCGCTGCGACACAAACATCATCAGTTACTAGCAGAAAACCAACCTCACGATCACGAGCGTCTCCTAAAGAAGACCTCAGACAGGACACGGACACCAAACAGAGACTTCAAGGCACTTCTGTGgcttctgttttcatttggtttttttttgttttttttttaaagctgcataaactaatctttttattttgttcagaaaCTCTGAAGTAGTGATGCAACTAAACTCAAATCAACCGCCAATAACAACACaatctttgaaatgaaaaaaatcttcctttgataaaataaatacttctttCTCTTTCGTTCAGACATTAAAACACTTGTTTTAGGGCAAAGAGTCATAAAATCACTTCCTTGACTTATTCATGATAAGAACAATCTAGTCTGCAGCTCATTAGTAAGTTAGTGagtcattaaatatttctaatctGTACTGTTGAATTATCTTTACTCTGATTCTACACTCGGTGTACTCTCTGTTAGGAATCATATTTCTTCAGCTGTTGCAGTAAATACGTTTTCTGTCGGTCCTGTCAGATCTACAATAGTAGATCTACATAAAGATCAGGACTGAAGCAGGAAAACGTGATTTTTGGATCGAACTGTCAGTTACAGTAAGAACGCTCCTCacatcagaagaagaagaaactctGAGTGATCAGGAGTCAAACTCCGGCTGTTCATCCACCAGAACCGAGGGAGGATACGAGCCTCTGAAGTCCAGACGAGAGACGCCCAGAGCGATCAGACAGCGCCACACctgaggagacagagagagagagagagagagagagagagagagagagagacagagagagagacagagacagagagagagagagagagagagagagaga

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115670 lncRNA downstream 265 430994 ~ 431422 (-) True G78162
TU115663 lncRNA downstream 26707 403133 ~ 404980 (-) False LOC122353669
TU115664 lncRNA downstream 26707 403246 ~ 404980 (-) False LOC122353669
TU115623 lncRNA downstream 106731 324198 ~ 324956 (-) False LOC122354324
TU115652 lncRNA downstream 158723 271740 ~ 272964 (-) True G78150
TU115642 lncRNA upstream 5225 443885 ~ 448901 (-) True G78144
TU115646 lncRNA upstream 5225 443885 ~ 448901 (-) False G78144
TU115678 lncRNA upstream 19633 458293 ~ 506641 (-) False G78167
TU115679 lncRNA upstream 65466 504126 ~ 506641 (-) True G78167
TU115709 lncRNA upstream 153955 592615 ~ 594641 (-) True G78192
XM_043251541.1 mRNA downstream 6022 414402 ~ 425665 (-) True mettl1
XM_043251540.1 mRNA downstream 19102 406021 ~ 412585 (-) True LOC122353667
XM_043251542.1 mRNA downstream 26276 402940 ~ 405411 (-) True LOC122353669
XM_043252461.1 mRNA downstream 37501 386034 ~ 394186 (-) True si:ch1073-456m8.1
XM_043251510.1 mRNA downstream 46363 374160 ~ 385324 (-) True avil
XM_043251608.1 mRNA upstream 473015 911675 ~ 933876 (-) False vgll4b
XM_043251609.1 mRNA upstream 473015 911675 ~ 925758 (-) True vgll4b
XM_043251605.1 mRNA upstream 495192 933852 ~ 939272 (-) True tamm41
XM_043251604.1 mRNA upstream 495192 933852 ~ 939267 (-) False tamm41
XM_043251607.1 mRNA upstream 495192 933852 ~ 939103 (-) False tamm41
XR_006252075.1 other downstream 142741 282263 ~ 288946 (-) False LOC122353949
TU115653 other downstream 151110 279995 ~ 280577 (-) False LOC122354323
TU115630 other downstream 205875 218386 ~ 225812 (-) False LOC122353952
TU115639 other upstream 5225 443885 ~ 448901 (-) False G78144
TU115640 other upstream 5225 443885 ~ 448901 (-) False G78144
TU115643 other upstream 5225 443885 ~ 448901 (-) False G78144
TU115685 other upstream 14474 453134 ~ 455998 (-) True G78170
TU115720 other upstream 261283 699943 ~ 775965 (-) False G78195

Expression Profile