RNA id: TU115720


Basic Information

Item Value
RNA id TU115720
length 10225
RNA type TUCP
GC content 0.41
exon number 2
gene id G78195
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 599107 ~ 794136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAACACACCTTTATTATTCCCATAAAGGCACCAAACAATTGTGGACACGAGACGGCACAGTTTATAATCTAtagtactttatttttttttaaatcagataacACATGGCAGTCATGCTTTTATATAACACCAtctaaagacatttattatatatatatattttttttacatatcaatattttacattaggcCCAAACAGttagaaatatacaaaacaatattttctttgacTAGACATATTATCTATTCTCTTATAATCTTCCGTCGTTgttattcatttgttattattactattctttttttacatttcagaaagaTATGTGCTTTATATAGTTTCTGAGATCGATGCATTATTGCAGTAAACAGCAAATAATATAAGGTTCATCAACAAGACAAAAACCTCAAAACGGACATTCACAGGTACTTTTACACGGTACAGTTTTACAACATTGTTTCAGAGAGAAATCTGATGAATTTTATACAATTTCACGAAAAACTCTTATTGATTGCACATTTTTTCATCAGACGTCTTGCAGAGAATAAATCGACTAATTAATCCAGATCTCTGTCACATGTAGCTGCCGCAGAAGCAAACTAACAGTGCTCTTTTTCAGATTCCTTTGTGGCTTGTCAGCTTAAAGCTCTGTGCTTTTCACCagtggcattttaaaataaaacagtggaAATAAAACAGTCGTTTCTCTCCGTCTCACGCGCACACGCGCAcccacacgcacgcacacacacacacacacacatatatatcccTTTATATGATTccatgtaaattatttattgccCAACTAGTCTGtagatttaaagagaaaacagcATCATTTCTCCTTGACATATTTTCATTCGAACAACGGCtctgtcaggttttttttgacACAGAGTGCTGGTTTGTCAACGATGTCTGACAAAATGACCCTAGAAACCATGGCAACAGACTATAGCTTCTGCTCAGAAGTGATTATTTGCTGAAGGCTGCTCACAGCTATAATCGTTTTTGATCCAGGAGAGCAAATTTTGGTCACTTTCGCCATTTTTTCCTGAGGAGTGGCATGCAAATGTGGTGAGCAGGATTAACAGTGGTTTCACGGGGTACGTCTGCCCCCAAAAATGACTTTTCGAACCCTGTGCAGTGATACGGTGCGACGTAAAACAGTTTTGAAGATCTGTCAGTAGCATAAACACGAATTTGGTCCTTCTTACTCTTACATAGAAAACATGTACTAAAATGATTctaaaaaacacatacaaagttattttgtcttagaaaataaaaaaaggaaaaaaatagtaacagtctttttttttgacgTCAATTGGCCCCCGCGGCTGGTAATTCATCACTGCCTGGGACGTATGTAAACCAAATCCATACTGGTCTTGTGCTTTTCAGGGTTTGCCCGAGGGCTAAACGGGAGAAGGGCTGTTTGAAACGGTTCGAGTCTTGAATAGTGTCGCCTGGCTACGTAACCTTGACATACAAGGTTGATCTTGCCCTGTTGCACGCTCCCATATTCTCGCTCCCtgcttttatatagttttataaatgtgtatatgtatgtatgtatgtatatatatatatatatatatattttttttttttttctcattgagtATGCCTGAGCTAACAGTTAAAGCTTGTGCACCTTATCTTGAtgagtaaaactgaaaaaaaccaaaaaaaagttggaGAAAAATGAGTTGCATATTAAGTGTATGACATCATGCCTTTCTAATTCCAAAGAATATCAATGAATACGTGGGTGACTTCATAAGTGTGCCTTCCAACAGACCCCCGTTTGTCCTTTTGCTTCTAGAGTACAATAAATAGTTAACGACTAGTGAATACTGTTGAGATGCTAGAGTATATTTACTGACTGCAGGAAGACAAGCTTGATTTGAACACAGAAGCACATCTAAATTTACACCACAGAAATTCATTCATATCCGGATAGTGCAGAAAAGgatcataaatgtatatatagatatattttttgttttgttttgtttttttttttgtttgtctgttttttgtcggtttgggtttttctttttttttttttttaagaaaagagtCAAAAGCAACATTCCTTCTTTTCGTTTTCGTCACATGACATAATTCAGTTGTTCAAAGTGTCGTCAGCTCAGGAGCTGGGCTCATTTCCTTTAGCCAAAAGAAATCtacaaattaaatgtcaaaaagaataagaattaacacaataaatcacaataGTTGAACACAATTTTGATTTCCATACAGAGATGCCAGATATAACTTAGTTACATTTTTCCAACATAAAACCCATCGCAGCTTCTGATGGTCACACGGAACCGAAactattttatgttaaatagtATGCACTtctaaagaagatatttaaatcCAACCTGATATATCTGCTCACGTTTGAGGCCGACCACAAGTTCATCGCAGAAACCTTCGAAGCCAGCCAAACAGATCGGATGTTTTCGGGGGTGCTCGGAGCAGTCGATCCTGACACTCGTTTAATACTACGATGCCACGTGAATGATATATCTCCCACTACATTTTGGTTTCTTTCATCTTCTAAAAATATCTACATTATTTGACAAAATAGCAGGCAAGTCCAGCGCACGATTGGAAATAAAACATCTAGAGTCTGATATTACAGGAGTACCGAACAACGTGAGCTGTTCCAACTACGTCTGCTGCGTGGTTTTGAACCCTACAAAGAAGTTTTAAACCCTACAAAGGAACCAGGATGTATCTACAGGTTTGTAAACAAATTACATTCTCTTTAGGACATAAATAAGTTAAAGTAGTTATTGAAGCAGAACAAGGCAACATGCCAACAAATAAAGATAAactctgtaaatatatatttataatgtgtctataaatatatatgtacgcTTAATAAATTCTAATTTCCATgggtttctctttttttttctgacaggtGCAAATCTACTGTGCAAGTTCGGAGTCCTGCGACCTGGATACACCTTAATCAATAACCAAATAAATCTATACAATTAGATACATGCCACACACAATACTCACAGATCAGTGAATCAGAGAAGCTGTCTTAAAATAGCAGTCCACCGCACATCccatcaaatcaaatcaaaaccgtttaaataaaaataaaggtttccaAATAAAAACGTGGGTAAATGTACATTCATGCAGGAGCAACGATAATAGCTGAAGTCGATTTAAATTACTCGTAATAGTCTGTCGTTTCCTCAGGAAGTGGGAGCGGTGCACTTGCGCTCTTGTGTCGAGTTTCTCGAGTCGCTCCGAGTCAGTCGTCATTCATGCGTTCGATAAAAGATTGTGGCGCGACCACACGTACAGTCAACAGTACACGATCCACGTTCGCGTGCACTCTGGAGCGCTTCTAAACGTAGAGTCTAAGGTGATTCTTGAGCGGTCTCCCACGTGAGGTGGCTAAAGCGATGTCTCCAGACTATGAAGCGGGCTCCCGGGACTGGAGGAAGCAGCAGATTTACTTGTGTCGGTCGTCAGGTTTATGCCGCTGTCAATGGCGTTGTTGTTCTTGTTAGGAGATGAGGGCTGACTGGAGTTCTTCCTGGCCGCCTCGTCGTCAATGTCGGTGTCGTCTATGAGAGGAATGTGAGGTGTGGAGTCCTCTATTCTAAACTCTGGATGAGTCATGAAATTGTGGATGGAGGTTCTGGATTCGGGTTTTTCCAAGCCTTCGTAGAGGGAGCTACGAAATGCGTTCACAACACGTATCTGCGTGAGGAAAGAGATCGCTGTCAAAGGCTTGGAAAGTGAGCTCGGAAGACCCCCCCCCCAACCCGAGTGGCACAGTGACAACAGGAGGAGGGAAAGGCCGTGGACCCATTCGGAAAGCATCCCTAATTTACTTACTCTACCGTGCACTGAGACAATTTAGGGATTGCATCGAAAAGAACATAACTCAAACTCATGGTAAACTAAAGAGACTGGAAAGGAAAACATAGGCAATGCTCTTATGTCCCGTACAGTACACAATACAGTATACAGTGTATGGTCCAAAGTGTTGTATACCTAGAGACAAGCATtgttatttcaacaaaaatggaacaaaaaaaaagtcaaacacaaaggaaaaccAAAACGTCATGCAAGTTGAACACATCTCGTGGAAAGTTGGTAAGAGGAGTAGATTAGATTTTGAGGTCCAGGATGAGTTTCAAGGTAAACACAaagtcaaaggcaaacaaaagaGAAGTCATCTACAGAGACTCAGATAGAGGATGACGGGGACAGGAGAGCCTATGCTTTGAGAGCATAGAGTCACAACACGATGATGGAAGCGAACCAAAAGCTTGACAAGCCAACTCAACGACTACACACAACATGCAACTCGGGACAACACCATGTGGAGATGaacacaggcacacagactGTGGAATAAGAAAAAAGACCAGAACAAACACAGGTCTGTTCTTTCAACAACTCCATGCGTCTCTGTGTAAACACTCAAGTATAGGCAGAAGAGTTTTGTTAAGATTCACGGAACTACTCTAAAAAAATAGGAGGATCACTTGATAAGTTTTTACTGTGTGAAACTGAGACTTCCTAGAAATATTTTACTGTGCTAGTTTGGAGCAGCAAATATTCCACTTTAAAGGTTACCATTACAAACAAGTACGAAAATCTAGGCATAATTCAAACAGTAAACTAATTATGAATACAGTCTATGGTTCTGTTCCACATCCTCGTGAGCTATCTACCTAGACAGCAAGATGTCAACTTCTTCTGGGCAAAATCTAAAATAAGggtatcccagaatgcactgcattAAGTTTGGTGTTTATTTTCATCCGAGATGTATGCTGGGGCCCCTCAAGGATATGTGCTGCGCCCCCTTCCCTTCACTCTGCTGACCCACGACTGCATTCATCATACAACTCAAACCTCCTCATCAAATTTACAGATGACATGACTGTGGTGGGTCTCATGAGTAATTTAGATGAGGCAAGCTCGAGGAGCCAGGTGAGCCGACTGGCCGGGTGGTGCGGTGCTCACTCTCTCCACAATCGCACCGTTGATGGTCAGAGGAGCAGCACCAAGTTCCTGGGTGTACACATCACAGAGGCCAACAGCACTGGCCAAGTAAACACAACAACGTCTCTAATTCTTCCGCAAACTGAAAAGAGCCAGAACCTTGGCCCCCTTCATGTGCACCTTCAACAGAGGCACCATCGAGAGCATCCTGACCAGCTGCACCACTGTGATATGGCACCTGCAATGTGTCCTGTCGCAAGACCCTCCAACGCATGGTGAGAGCAGCTGAGAAGAACGTTGgtgtctctcttctctccctccAGGACATTTACAACACCCGTCCGACCCGCAAAGCCCTCTGCATTACAGGTGATCCCACCCTCCCGATCCTGCCTCCCCTTCTCCTCTCCTTGCCCCATGCACCACTGACCCTCATATCCCCCTCTAAGCTCTCTCgctatattttttgttttaatttatctgtatatttatattctattgtTAGTCTTATCTGTATGCACATAGGGTCTGAGAGTAATGCATTGGCTATAGAAATGTTGATATCTGTCACGTATGGGGCTCTATTTGGCTTAGGATGCTGCTTCAAGGAAAGAGTGTTCCATTCTGCCCATGAAGAGTTTTGCCCCAAAGTGTGTCGGGAGCAAGttaaagctaaactctgcaggacttTAGACTGGACAACTGTGTCTTGTGGATGGCAAAAAAGTTGTTCCTTCTCAAACTGTATCATAGCTGCATCTATAAACCACCCCACTTGAAAATGAGTAAGTCACAGCCTTTGCCACTGTTTGTGTAAACCACTATTCCAGAGATAGATGCCAGAGCAAAAGGTCGAAGCTCACTAGGGTTTGGAACAGAGCCTCTATGATATGACCAACTAACTACTGACCTGCTAAAAATGAAGAAACCACGAACTACGTCTAACGACCATTAAACTCAATTTTTACCTTCTGTCCTGGTAGCAAATAGCACGCTTTCAACCTAGCTAAGAGCAAACTTACAAAGCCAACACAAACAGGTCTGAATGACAGATGAAAACAAATGTCAGAGGGAATCACAAAGATGAAGACTGGCCTAACGTTTAGTGAGATTTTGCAGCTGTCAGCATCACACAGCAGACTACATGACCAACAGACTAAAGCCACGAGACATAATGGGTCGCTGTGGGCCTCAGATCTACATCACACAGACGACAAATAAGACAAGACTATGGGGAGGAAGAGCCACTCTCTTCACACGTCTCCGTAGCtgtgtggagagaaaaaaagtaaaaatagggGAACAAAACAGCCTCCCGTGATCAACAGAGTAACTTCAACAATGCAGCCTAAAGCATTTCGAAGAACATGTCAGGCTATAGCTGAGTAGGGAATGGTTGGCTATACTTGAATGTTTACCCAGCCTGGTGAGTTTGTTGGTGGAATATTAGTTCACATCAATTTTGCGACGGACAATGGAGGGACTCACAACCTGAAATTCACTTCGTAGGCTGCACCCTTAGTCCAGGGCTCTTAGCACTCTggggaaaacaaacacatgataCATTGAAACACATGTTCTTCTGAGAATTTGGTTAAAGATGATCTGATAAACAGTAACATGAGAAGTAAGAGGAAATCAGAAGCAAAGCAGATTTTCAGGGATGCCCTTTGACAATACTTTCCACTATTTGTCTATGTCTAAAGACATAGTTTGATAGCTCAGATGTAATGCCAAATCTCCATTGGACCCAATGGGTAATGCCTGATTAGAAATGTCTGTCAGATCTTCCCACTGTAGCCGTACTGTATGGACACACCGTCCTATcgaacatcaaaaaaaaaaaactggagaaATTGGCAAATTACCATTGGCAATCCATTGGCAAATTACTGAGAAGTAATCTGACATTGCTTATAAAACCAAAGCACTTTCTTAGTCTAGAGATGAGGCGACTCTTTTGAGGTCTAGAGCAGTGGTCATCAAACTTGGTCCTGAGGTGCCGGTATCCTGTTGAGTTtagcctcaacacacctgcttTGAAGTTTCAATGATACCTAAtaagagcttgattagctgcttcaggtatGTTTGCTTAGGTTTGAAGCTAAGCTTAGCTGGACACTGGCACCTAACTTGGAGACCCCTGGTCTAGAGTCTATGACTACATGAAGtctatttcacatttttaatagctTCCAAAAATAActagttatagttatatatataaaacatattgtaCTATTGTACTACCCTTGGTTGAAATGGAGATTTTTGGGTGCAGTTATTATCCTTTACTGAACCCTGAACTCAAATCAGGTCAATGTGtgcagtgttcctttaaaactcacaattaaaataataaaatgactcaCTAAGTGGTGCTAAATGTCTTCATACTTCATAATTGTCCAAGGGAATACAACATtcaagtgaattttgcatctgaTGTGCCCTTTAAGGATTTTGTTGTCAATAATGAAGCTAAACATGGATCCATTTTggtgttgccatagaaacattTCTGACTCAGAGAATTTGAACAGCTCTGAGTAGCTGTTGTCTCGTAATTATGGTAACCCTAGCATAagattaatgcattatatttgcaACAGATTATGGAACAGAGCTTCTTTCTAAAATCCCAGAATTGCTTCCCTGTGATGCCTTTTTCATGATGtttcttttgcactttaaaCTTTCATGacctatgtatgtatgtttaggTAGGGACTGCATCTTATATTCTGCAATGTTCTGTCTCCAGATTTGTGatgtataactttttttaaaggagtTTAAATCtggttattttttgtttttgttatgatTGGACCACTTCAGGTCTGGAGTCCAAGGACATCCCTGAGAAACACCCAAAGAAGAGTGTCACTCACGCCCAGAGGGAGCAGCAGCAGTGCTGGTAGGAGAGGAAAGAGCATTGCACAAGGACACGTGACTAGGACTAGAAACATTGGTTACATCCTGATTTTGACTGGTGGTGGAGGACTGGCGTCTCAGAGCCCCCTGAAAGGAAGTCCCGCTCTTGAATGTGTTCACTACCTCGATCTGCAGGAAGGGGGAGAGAAATACATGGAGCAATGCTTCATCACAATGGACATGGTTTAGAAGACTATGACAGGCCCTCATCACACATTAAACACTTCATCTTAAATTAGCACTGAGGCTTTGATGGCTTTAGAAAGGTCCTCCTCCCCGCTGATGCAGCTTTGACAGCAGTCATGATGAACGCCCAGAGACCCTTGAGAGCCCTGCCACAGGACTGCATCATTACGCCTAGAAGAGCACTGTTATCatatcaaaaaacaaacagcaggcCATAGCAATTCACTCTAAATGATGTGCATGCAACTACCAAAACTCAGTTAGTGCTAATATAAATTGGACGGATGGTATTCCAGTAGTGGGGATATTTAGAATATGGAAGTGTTTCTCAACCCTGATCTTGGGCGGCTCccaacactgcacattttgtatgtgtTCCTTATCTGTCACACCCATTTCAGGTCCTAGAGCTTCTTCTAGTGACACACAAAAGCGGAGCTGCATCTATCGAttggtgtatgacatcaaaATACAGCGAGAGCATTTGACAGCTGATAGGTCCGTATGCTCTTGCAGTACTTTAATGTGACACACCAATCAGTGGATGCAGCGCCACTTCAAGTGAACATACctaaaatatgcagttttggGGAGTGTCCAGGACCAGGATTGAGAAACACTGGAATATGGGAAGTCATTCTCTGTTAACTGGTTCGCTGCTTGTCTGTGTTCGTAGCATGAGTTGTGTGATTTTGACTGGTCTGAGAAGAAGCGTAGCAGAAGTGACGGTACAGAAGTCTTTGGGCAGGTAGGAGATATCTCTGGTACTCTGCGGCTTGATGATGTGATGGTTGcgactgtttttaaaaatgtgatggaCAACtttgtctaaaatgtaaattccaGTCCTGTGGCCCCCTGCACTTTTTCATGTCCCCCTTATTTAACACACTTGATTGAGATCATCAGCTTGTTAGGATTAAGATCCATGAACTGAACTAATAAGCTGATGATCTCAGTCGGGTATGTTAAATAAGAGAGACATGCAATACGTACAAAGTATAGACTAGAATTGAGAACCAAAGCCTCATGACACTCACAACGGTGCTGTTGGTCTGAATATCCGGCCTCATGCTATTCAGAACAACAAAGTTATTGTGATATTACCTAAGGACATGCTTTTAGACTGAAGAGAAATATTATCACAGGGATGGCTTATGAATGGGGCAATGTAAACTTAGTGGCTTTCTCAAATCTTGCTAGAAAAACTGTTCTACATTACTTCCAGTTCACACTAGAGACCACACTAGTCCTTGTTACAGAGTAATTGTACATTTAAGTGGTAAGTGATATTAATTATCTACATGTTCTTACTGTATGGTTAGggataggattagggtttgTCTTAAGATTACTTTATTGTTAGGAGTgcgtgtaacaaggacaccttaaagtaaagtgttaccaactaTTTTATCTATTTCATGACAACagcttcattgttttttaagTGTAGGGATTGTAATAGAAATGCAATTATGTTGTTCCTAATCGAACGTAAGTGTTATACTGAggttttcattgtaatttagATCTAATTATGCAAAATGCTATTCAATAAATGACAGTTGAGTTGGAATATAAGTGTGTTTCATGAAAGGTGTACTGACAGCCCATGATTAATGCGGCAGTACTGAAGTCTTGCGATCAGCGCTGATGTTTGTGCCAGTGATGGCATTTGGCAGAGCTGAGCTGCGGTTCAACCTCCGCACTGTTCTAAATCTGGCCCTAAAACACACTCCCAGCCGTGCAGATGGTGAATCTCAAgtacataattacaaacacaaTCGATGTACGAGCAGAAGTATAGTTACTTCCTACAGATGCCATTACAGTGCAGAATTCATGCTGATTGTTTCATGCGTCGTAGCTTCCCAAAGACCGCCAGAGGTTCTAACCTGAGTCTGGATTCTGTTGAGGCCTCTGAACCAGAGGATCTGCCCTCGTCTTAACTCCCTCTCAGCGTGATCGATCTCCTCCTGGTCCTCGTTCATCTCCTCCTCGGGCATTTCATCCTTCTGAGTCAGCTGACCAGCGCCTTTGAGGAACCTCAGCTTGCTGTTTGGGATCGTTGAGATGACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115709 lncRNA downstream 105302 592615 ~ 594641 (-) True G78192
TU115678 lncRNA downstream 193302 458293 ~ 506641 (-) False G78167
TU115679 lncRNA downstream 193302 504126 ~ 506641 (-) True G78167
TU115642 lncRNA downstream 251042 443885 ~ 448901 (-) True G78144
TU115646 lncRNA downstream 251042 443885 ~ 448901 (-) False G78144
TU115867 lncRNA upstream 129842 905807 ~ 907574 (-) True G78298
TU115869 lncRNA upstream 196997 972962 ~ 974700 (-) False LOC122353728
TU115905 lncRNA upstream 245511 1021476 ~ 1023810 (-) True G78324
TU115912 lncRNA upstream 273441 1049406 ~ 1049936 (-) True G78327
TU115920 lncRNA upstream 274113 1050078 ~ 1052544 (-) True G78331
XM_043251541.1 mRNA downstream 274278 414402 ~ 425665 (-) True mettl1
XM_043251540.1 mRNA downstream 287358 406021 ~ 412585 (-) True LOC122353667
XM_043251542.1 mRNA downstream 294532 402940 ~ 405411 (-) True LOC122353669
XM_043252461.1 mRNA downstream 305757 386034 ~ 394186 (-) True si:ch1073-456m8.1
XM_043251510.1 mRNA downstream 314619 374160 ~ 385324 (-) True avil
XM_043251608.1 mRNA upstream 135710 911675 ~ 933876 (-) False vgll4b
XM_043251609.1 mRNA upstream 135710 911675 ~ 925758 (-) True vgll4b
XM_043251605.1 mRNA upstream 157887 933852 ~ 939272 (-) True tamm41
XM_043251604.1 mRNA upstream 157887 933852 ~ 939267 (-) False tamm41
XM_043251607.1 mRNA upstream 157887 933852 ~ 939103 (-) False tamm41
TU115685 other downstream 243945 453134 ~ 455998 (-) True G78170
TU115639 other downstream 251042 443885 ~ 448901 (-) False G78144
TU115640 other downstream 251042 443885 ~ 448901 (-) False G78144
TU115643 other downstream 251042 443885 ~ 448901 (-) False G78144
XR_006252075.1 other downstream 410997 282263 ~ 288946 (-) False LOC122353949
unassigned_transcript_1475 other upstream 330380 1106345 ~ 1106416 (-) True trnac-gca_5
unassigned_transcript_1476 other upstream 330814 1106779 ~ 1106850 (-) True trnac-gca_6
unassigned_transcript_1477 other upstream 331024 1106989 ~ 1107060 (-) True trnac-gca_7
unassigned_transcript_1478 other upstream 331240 1107205 ~ 1107276 (-) True trnac-gca_8
unassigned_transcript_1479 other upstream 331458 1107423 ~ 1107494 (-) True trnac-gca_9

Expression Profile