RNA id: TU115939


Basic Information

Item Value
RNA id TU115939
length 1368
lncRNA type sense_over
GC content 0.47
exon number 3
gene id G78339
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1075785 ~ 1158877 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttctttttttgtcCCCCTTCCTCCTCCAGATTTATTGatagtttaaaattacatttctatgTCCTAGAACTTCAGTTGCATTCACCTTCCGACTTAAAAACTGAGTACAAGCAAatgaaagtctttttttattatcattattattattattattattttagagtaGTCTAAGTGAtattgtacaaaaataacattttgatttcTGTGAAAACATTCGCCTTTCTTCGAactccaaatctgttttacgactctttcttttttttgttgtttttcttgtatTGAAGTTTTCACCTTGGGTAGAGCGACCTAATCTCCGTCCGTCCGCTTCGCCTGGGATCACGAACTAGGTTTTCGACGCGGCGGCCGCCCCGGATGATCGAGCAGCCcgcggttttttttttttttacaaaggatTTCTGAAACTGGCGTTACACGAGGTTTCCAGAATATGCTATAAAGTCGTTTGCTTAACGTCACGCGTTACGTATCTATTTTGTCGTCGTTTTCTCCACGGAGCTGCGCGCTGCTGGTTTGGCCCGGACAGACCCGACCGCGTGTGTCCCGTGCCGCTTTTCCAGGCCAATCGCTCGTAGGCTACCTCGGTCTcgtctgtaaaacaaaaaaaatgcaaatcgTTCGGAAGCGAGCGCTTCCCTGAtctctttacttttttactttttttttttttcttcccgaTCTCTCCGAGGCCGCGCTCCACGAGCCTCCAGAGGCCTATCCGACAAACGCTCAACACATCTCACACGTCCCTGTTCACCAGTGGCATGGAAAGGGGGTTCTTTAACAAAGCATTATACATAACACCTCTACcaaactaaacataaacatttttttttttgtattaaatgcagaaagtggaaagtttttttttccacccctttcctccttttaacatgtcgaGAGCTCACTGGCCTGGGAATAGCCTCTATCTGCCAACCGTTGGCCAGTGAAGAGGATTCAGAGAAAATAATACAACCATCAATCAGAAAAAGGAGGGGCGAGCGAGGAGACGGGACTAAGCGGTGGCCTCGATGGTGCACTCTTTGGCCACGTGGCCGGACTTCCCGCAGTTGTAGCAGTTGACTTCGCTGGCCTTGCTGCACTGTACGGCCACGTGTCCGATCTCTCCGCCACCTGTAGCACTTGACCTTCTCGCAGCCCTTCTGGATGTGTCCGAATCCGCCACAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCGCAGTCCCGGGCCATGTGTCCGGCTTTACCACAGTTATAGCAGACCTGCTCGCGCTCCTTCTTGGGCTCCTTGCAGTCCCTGGAGATGTGGCCGCCTCTGCCACAGTTGTAGCACGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115930 lncRNA downstream 1329 1072694 ~ 1074456 (-) True G78338
TU115933 lncRNA downstream 2234 1072546 ~ 1073551 (-) False G78338
TU115932 lncRNA downstream 2234 1072694 ~ 1073551 (-) False G78338
TU115934 lncRNA downstream 2643 1072694 ~ 1073142 (-) False G78338
TU115920 lncRNA downstream 23241 1050078 ~ 1052544 (-) True G78331
TU115956 lncRNA upstream 9445 1168322 ~ 1168814 (-) True G78354
TU115978 lncRNA upstream 44999 1203876 ~ 1204107 (-) True G78373
TU115985 lncRNA upstream 53399 1212276 ~ 1213265 (-) True G78378
TU116043 lncRNA upstream 122855 1281732 ~ 1284944 (-) True G78410
TU116048 lncRNA upstream 128416 1287293 ~ 1298959 (-) False G78413
XM_043252077.1 mRNA downstream 5286 1054577 ~ 1070499 (-) False raf1b
XM_043252076.1 mRNA downstream 8729 1054577 ~ 1067056 (-) True raf1b
XM_043252079.1 mRNA downstream 29829 1044079 ~ 1045956 (-) True mkrn2os.1
XM_043251272.1 mRNA downstream 32366 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043251610.1 mRNA downstream 85523 985343 ~ 990262 (-) True LOC122353725
XM_043251522.1 mRNA upstream 46242 1205119 ~ 1206837 (-) True pdrg1
XM_043251322.1 mRNA upstream 49323 1208200 ~ 1211684 (-) True fam217bb
XM_043251323.1 mRNA upstream 49323 1208200 ~ 1211567 (-) False fam217bb
XM_043251560.1 mRNA upstream 58342 1217219 ~ 1260090 (-) True phactr3b
XM_043251959.1 mRNA upstream 117490 1276367 ~ 1277356 (-) True si:ch73-303b9.1
TU115720 other downstream 299820 699943 ~ 775965 (-) False G78195
TU115722 other downstream 299820 699943 ~ 775965 (-) False G78195
TU115726 other downstream 299820 699943 ~ 775965 (-) False G78195
TU115685 other downstream 619787 453134 ~ 455998 (-) True G78170
TU115643 other downstream 626884 443885 ~ 448901 (-) False G78144
unassigned_transcript_1576 other upstream 107 1158984 ~ 1159055 (-) True trnac-gca_104
unassigned_transcript_1577 other upstream 316 1159193 ~ 1159263 (-) True trnac-gca_105
unassigned_transcript_1578 other upstream 536 1159413 ~ 1159483 (-) True trnac-gca_106
unassigned_transcript_1579 other upstream 967 1159844 ~ 1159915 (-) True trnac-gca_107
unassigned_transcript_1580 other upstream 1182 1160059 ~ 1160130 (-) True trnac-gca_108

Expression Profile