RNA id: XM_043252581.1


Basic Information

Item Value
RNA id XM_043252581.1
length 5424
RNA type mRNA
GC content 0.46
exon number 29
gene id LOC122354408
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1588704 ~ 1696787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAAAAAGTCAAACACCTCAGGAGCCCGCTCGTCGTGTCGTGTCTGTTTCACGGCAGATGGCGCAGTGAACCGGCGGCTTCGTGTTACAGCGAGGCTGGAGAATCCGCTAACTAGTTCCCCTTCATTAGTAACGACCTAAAACATTGCTTGGTTATCGTGTCCTGATGGGTGAGCTCCGTCCTGACTGACCCGTGGAGATGGGAGTAGTAAAGATAAGCGAGCAGtCACTCCTCGTCCAGGCGGTATTTAGCCAGAATGCTGAAATGGTGGAATTTTTGTTGGAGCAAAATGAAGAAGTCGACGAACTGGACCACGAGCGCCGCACCGCATTGCATGCTGCGTCTCACGTAGGTGGTGTTTATATCATGGACCTCCTCATCAGTTCAGGTGCTGATGTTAACGCTAAAGACCAGGAGTGGCTGACTCCTCTGCATCGGGCAGCCGCCTCACAGAACGAAGGTTCTGTCGGGCTGCTGCTGGGAAAGGGAGCCGAGGTGAACGCGCAGGACAGGTTCTGTCAGACGCCGCTGCATGTAGCTGCAGCCAACGGAGCCAGGAGCTGCGTGGAAATGCTGATCCCTTACTCGAGCGGCCTGGATGCAGCGGACCGCTTCGGGAGAACCGCTTTGCATCATGCAGCCCACTGCGGACACGACGGAGTGAACCTGCTCCTAAATAAAGGGGCCAACGTGACTTCCAGAGACATAAAGGAGAGACAACCTATCCATTTGGCAGCTCATCTAGGGCATCTGGAGGTCGTCAAGCACTTAGTAGTGCGCAGTGCGGATGTGTCCTGCAGAGACAAGCAGGGGTTCACTCCTCTACATGCGGCGGCTCTCGGTGGACACACTGAAGTGGTCGGGTACCTGCTGAAACACGGAGCAGAGATTGATGAAGCAGACGGCTCCGGTAACAGCGCTCTGCACATGGTGTGTCACGCCGGGCTCAGGGCGGTAGCTAGTGAGCTGGTTAACTGCGGCGCCGGTGTTAACGGGTTAAACGCGCATGGCTGCACGCCGCTGCACCTGTCCGCTGCCTCCGCTGATGGAGCCCTGTGTCTGGAGCTGCTGGTCAATCACGGGGCAGATGTTAACATTCCGAATAAGGCCGGGAAGAGTCCTTTGCACATGGCTGCCATGCACGGACACTTCACCCGATCCCAGATACTCATTCAAAATGGTGCAGAGGTGGAGTTTGTTGATAAATCTGGTAATACTCCTCTTCACTCTGCTGCTAAACACGGTCACGAGTTACTCATCACTATACTCTTGAGTAACGGCGCGGATGTGGCCAGGCGAGGCATTGACGGCATGACTTCGTTGCACCTGGCAGTGTTTTTTGGATTTTCAGACTGTTGCCAGAAGTTACTCTCCTCAGGGTTTGATATAAACACAGTGGACCGTCTGGGAAGGACGTGCCTGCATGTAGCTGCTTCAGGCGGGAATGTTGACTGTCTTAAATTGCTGTTAAACAGTGGTGCTGCTCTGAATAAAAGGGACGATTTTGGAAGGTCCCCTTTGCACTATACATCAGTGAACGGCTCATATCTGTGTACAGTGGCTCTGGTGAAAGCTGGAGCGGATGTTAATGAACAGGATATGAACGGATGCGCTGCACTGCACTACGCAGCCGCGGCCCAAACCTCACACAGTAGAGTTGAGCAGATCTGTCCCGACAGTGAGACTGATGAAGAAGCTCAGTGGTGTTTGGAGTTTCTTTTGCATAATGGTGCTGATCCAACACTGCGGGACAATAAAGGCTTCAGTCCGGTCCACTACGCAGCTGCCTGTGGTGACAGACACAACCTAAAATTGCTTATAGAAATGTCTTTCAAATGTGTGGAAGATGTGGAGAGTTGTGTTCCTGTGAGCCCTTTTCACTTAGCGGCGTATAATGGCCACAGTGAAGCTCTTCAAGTGCTGTCTGAAATACTGGTCAATGTAGACATGCAGGATCCCAGGGGTCATACAGCTCTGTATATGGCTGCTCTGAAAGGTCATGACCTTTGTGTGGAGCTTCTGCTGCTTCAAGGAGCCTCGTATGCCATCAGGGAGCACATCCACAGGTGGACACCATTGCATGCTTCAGCTGCCAATGGTCACACCGACTGCCTGCTTATGATGttgaaaagagaggaaaaaaatgacataattgaCCTCATGGACATACATGGACAGACTCCGCTGATGTTGGCTACACTGGGCAGTCACATAGACTGTGTCCACATGCTGCTTGAGAGAGGAAGTAATCCAGACACTGGAGACAGAAGAAGCCACACAGCATTGCATCGCGCAgcaGTGGTTGGTAGCGAAGAGTGTGTCTCAGCTTTGCTGGTGCATGGAGCCTTCGCTCTGTGCCGGGACGTTTATGGCAGAAGCCCTTTGCACTTGGCTGCCTCTTGTGGTCACACATGGCTGTTGCGTCCTTTGCTTGATGCGGCGTCGCTGTCGGACCCCCTCGACTCTCTGCTAGACTACAGCGCCTACACACCTACTCACTGGGCTGCTTACCATGGGCACAATGACTGTCTAGAAGCTTTACTTGAGTACAGGCCATCGAGCTTTCAGGAAGGGAACGCCTTCACACCGCTGCACTGTGCGCTAATTGCTGGTCGTGATGGTGCTGCTCGACTGCTTGCTGAAACTACGGGAACAAAAATCATGCACCTCACAGATGGCAAAGGAAGGACTCCCTTACATGCATCTTCGTATGCAGGAAACGTGGCATCGCTGCATTTGGCGTTGACCTGCGGCTCGGATGTAAACTCAGTCGATTATGCAGGGCGCTCCGCATTAATGATTGCTGCTGAGAATGGCCATACTTCTGCTGTGGATATCTTGCTTCATCAGGCCGGGGCAGACCTCTCGCTGCTGGACATCGACGGGAATTCAGCGCTTCATATGGCCTGTAGAAGAAGTCATGAAATGTGTGCTCTTCTCATTCTGGCGGAGATCGACGACCCAGCTCTCATCAACACCACAAACAGTGCCCTTCAAACACCTCTGCATGTTGCAGCAAGAAATGGCCTCGCCACTGTGGTTGAGGTTCTGCTTACTCGAGGCGCAACGGTTCTGGCCATTGATCAAGATGGACATATTCCGGCTTTGGCATGCGCACCAAACAAAGACGTGGCTGATTGCTTGGCTCTTATAATTTCCACAATGATGCCTTTTTCTGCCGGCACCGGCTGCAGCATCAGTCTGATGAATCACTGTGGCATTGCTGCATCCCATCAGCCCTTGTCCAAAGCCGTGCCTATACAACTGATTACAGAGGAACCATAGAGATGAACGGACACCAAACAATATGCTGAACTCTTGCCACTCATCTTTATCGTACAAGACTATATACAATGCTACTGCTTCAGCATCATGCTGTACATACTGTGACATATTCATTTCTAATACAGTACACCAATACAACTGCACCATTCCATTATGTGCTGAATTCCTCCTTTTTACGTAGCCTGTGTTTGTTGTAACACCAAGTTAGCACTGTGCTTTTATTTCAATCCTCGTTTCTTGTTATGAACAGTTCTAGTAGACTTTAATCATCATTTTGTACTGTAGAGTTGCACAATATGCACACATATCAGCATATCTCCAGGTTTACCGGAGGTTCGTTTGgggatttcattttaatagtttaattatgAAGTAACATTGTTGTCAGATGCCCAAGTATACTACCAGAAGCTCAAAATGATGGCATTTAGAAGAAAATTTGGAAGTAGTGTAGCCTGgagtgcatataaatatatcatcacaaaaaataaagatcaaGAGCACATAACAAGGTCTCTGCATGTTAATctaaatggtttatttttcccGGTTATGACGTTATTAATGCCGACCAAGTCTGTTGCTCTCAGTGAGCACTTTATTGGAATACAAATGATACAGTTTGCAGGTCAAAGACACATGAAATCCCATGTGCCTTAAAGAGCAGCCACACTTGCCTTTACATTGAAATATTGGGTCAACTGACTTGAAGAGCACTTTACACGGCATACAGTAGATCAGATGGCCTAATCTTGTTTTTGCAAAGTTTAGTGATTAATTCCTGGTTCTGTTAAATACGTAATCGCTGATGTTACAGTTGCTGAGTTGCATTCATTGGTTGGCTCCACAGTTAGCCCCTACATTCATCCACTTTGACCCCTTGTGGCCAGTTCCCTGACCTTTAATAAATAGGACAGAAGAGCATTATCACAGATAATCAGCCAGTCATAGTGTAACAGAGGCACGGCctttcacattattttccagTTTCGTCCTGTCACGCAATGCATAGGAAACTCATAAAATGGCCTCCCGACCTTTATCTTGGTGTCACTGTTGGGACGGTTACTTTTGAACAATCAGTACTTTGGACACTTTCATCTCctcttttgtaatgtttatcAATGTCTGATCAGCAAAGCATAAAAACAAGAGTCGAAGCaaaccttattattatttttttccatttctttttatttatatcagaaTTTTCTGGCAAAATATAGCTGAAaatctgcaaataaaaaaatggttgcATGATTTCAGTGTTATTAAATGTTCTTACAGCTTCTTTTTATTTGGCTTTTCTGTTTCAAAAACCCTCTGCGACAGACAACATTTCAATGTAAACCGTTTATGAAATTGGAGTGGGTCTACTTTGCAATCGTTGATCATATGGTCTGCAATCTCTGATTCTGAAAATATTCTCCGAAACTTTTCACAGGATGCTTATCTAATTTTTCAGAAAATCTATCAGCCTGTGATGAAAGACTAACTTAAAGCCATGCAGTATTCTGAGCTCAAAACCTATGGGGATCTTGGAGAAACGCACCAAATGTGATCAGATTCTGGTCTTCTGGGGCACTATAACTTACAAaaccttaatatttaaaacagataATCAAAAGTTGACTAACAATCAGACGTTGGGCTAGAAACTATAATAGCTTGGTGTGTTCATTCTGGAGagcataaaacaagaaaaacaggaCGCAATACCTCAAAAGAAATCTGACTTTACAAGACTGGAAAATCCATAAAGTTAAACaaatatacgtgtgtgtgtgtgtgtgtgtgtgtgatcctggcccacaaaatcagtcatggGTATATCTGTAGCAATACGCAATAATTTGGTCAAAGGAAACATTTatggttaaaaatgtatttttttatgccaaaattcattaggacattaagtaaaagaagatattttatacatttcctaCCGTCATTTATATCAAAATTGATTATCAATCAAGTTctcaatgtttattttcttcacaCCCTCAGATCAATTAGTTcatatctcagccaaatatcaTCATGACGACgtataaatgtcaatttaaaaactgattttgtggtcatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K06867 K06867; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116271 lncRNA downstream 166327 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 167998 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 168704 1510981 ~ 1511526 (-) True G78572
TU116244 lncRNA downstream 231225 1444615 ~ 1449005 (-) True G78549
TU116250 lncRNA downstream 244301 1434638 ~ 1435929 (-) True G78555
XR_006252086.1 lncRNA upstream 42913 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 226918 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 786883 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 786908 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 790697 2487484 ~ 2487836 (-) True G78756
XM_043252572.1 mRNA downstream 2035 1664162 ~ 1678195 (-) False dgkab
XM_043252577.1 mRNA downstream 2035 1665623 ~ 1678195 (-) False dgkab
XM_043252569.1 mRNA downstream 2036 1664162 ~ 1678194 (-) True dgkab
XM_043252576.1 mRNA downstream 2036 1664979 ~ 1678194 (-) False dgkab
XM_043252575.1 mRNA downstream 2037 1664162 ~ 1678193 (-) False dgkab
XM_043252414.1 mRNA upstream 797 1697584 ~ 1700458 (-) True cnpy2
XM_043252413.1 mRNA upstream 797 1697584 ~ 1699722 (-) False cnpy2
XM_043252411.1 mRNA upstream 7837 1704624 ~ 1716129 (-) False nab2
XM_043252410.1 mRNA upstream 7837 1704624 ~ 1716127 (-) False nab2
XM_043252160.1 mRNA upstream 28483 1725270 ~ 1729839 (-) False inpp1
TU116011 other downstream 457764 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 515889 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 516576 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 516796 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 517225 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252099.1 other upstream 7837 1704624 ~ 1716129 (-) True nab2
XR_006252142.1 other upstream 165900 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 168220 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 170483 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 172760 1869547 ~ 1869684 (-) True LOC122354692

Expression Profile