RNA id: TU116577


Basic Information

Item Value
RNA id TU116577
length 340
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G78757
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2488214 ~ 2488553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGGATCTGAGTGATTCGGAGCGACACTTCAAGAGTAGATGCTCGTCAGTATCGCATTTTTGCCGAGAGCAGAGAACAGAGGGGAGGGAAGTTCCTGGAAAAGAGCACAGCTGCTGTGAGCAGGAAATTCAGACTGGATCATGTAACGCATGTAAGGATCAGTTTAGTGGTGCGTTTGTTTCGCAAATAACTGTAATTTGCAACGTTTGACACCTCTGGTTACAATACAACTGTATATATGCAGGTAGGGTGAGATGAGCTCTTTCTAACGAATGTGGTTAAAGGAAAAAAGAACTATTTAAAGCGACCTGGTCTAATGTGATCTCCCAGTAATCTCCT

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116442 lncRNA upstream 549128 1936860 ~ 1939086 (+) True G78674
TU116417 lncRNA upstream 589151 1898733 ~ 1899063 (+) True G78652
TU116382 lncRNA upstream 685901 1801351 ~ 1802313 (+) True G78625
TU116231 lncRNA upstream 721625 1766371 ~ 1766589 (+) True G78540
TU116194 lncRNA upstream 818519 1669022 ~ 1669695 (+) True G78517
TU116594 lncRNA downstream 211842 2700395 ~ 2700703 (+) True G78772
TU116609 lncRNA downstream 323824 2812377 ~ 2813282 (+) True G78784
TU116630 lncRNA downstream 512566 3001119 ~ 3002991 (+) True G78797
TU116652 lncRNA downstream 626872 3115425 ~ 3116430 (+) True G78815
TU116746 lncRNA downstream 799648 3288201 ~ 3291400 (+) True G78886
XM_043251385.1 mRNA upstream 70756 2180463 ~ 2417458 (+) False fhit
XM_043251384.1 mRNA upstream 70756 2180466 ~ 2417458 (+) False fhit
XM_043251383.1 mRNA upstream 70756 2182199 ~ 2417458 (+) True fhit
XM_043251381.1 mRNA upstream 70756 2182201 ~ 2417458 (+) False fhit
XM_043251245.1 mRNA upstream 538859 1943662 ~ 1949355 (+) True odad1
XM_043252912.1 mRNA downstream 177955 2666508 ~ 2676482 (+) True si:ch211-236d3.4
XM_043251559.1 mRNA downstream 194153 2682706 ~ 2693039 (+) True ccdc3b
XM_043252544.1 mRNA downstream 311503 2800056 ~ 2805587 (+) True LOC122354390
XM_043251703.1 mRNA downstream 549876 3038429 ~ 3046680 (+) True nek4
XM_043251704.1 mRNA downstream 549876 3038429 ~ 3046680 (+) False nek4
XR_006252148.1 other upstream 610087 1878021 ~ 1878127 (+) True LOC122354697
unassigned_transcript_1620 other upstream 611300 1876831 ~ 1876914 (+) True trnas-gcu_27
unassigned_transcript_1619 other upstream 611525 1876619 ~ 1876689 (+) True trnap-agg_19
unassigned_transcript_1618 other upstream 611948 1876195 ~ 1876266 (+) True trnaq-cug_16
unassigned_transcript_1617 other upstream 612504 1875629 ~ 1875710 (+) True trnas-gcu_26
TU116585 other downstream 189582 2678135 ~ 2680142 (+) True G78763
TU116622 other downstream 336986 2825539 ~ 2826794 (+) True G78790
TU116720 other downstream 781646 3270199 ~ 3272619 (+) False camk2n1
TU116721 other downstream 782130 3270683 ~ 3272619 (+) True camk2n1
TU116739 other downstream 869706 3358259 ~ 3361290 (+) True LOC122353713

Expression Profile