RNA id: TU116596


Basic Information

Item Value
RNA id TU116596
length 275
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G78774
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2795022 ~ 2795296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctccctctctctgaccttctcgaaGGTCAGCTCGAACTGTTGTCAGAGACCTGCTAggggcagaacagaaacagcaagcagacaagtgaaaccatgtgttaccttttccagccaactgtacgcagtgcgaggttcgcgcagttattttcatgggctctgaccacctgggggcagaccattttcgtttcatttgtttcagcctcacccactgctcgtcaggtcctcttttcgtgtccaattcctgtttctctatttcaggccaaaacttctgtgg

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116595 lncRNA downstream 94293 2700513 ~ 2700729 (-) True G78773
TU116593 lncRNA downstream 97550 2697228 ~ 2697472 (-) True G78771
TU116591 lncRNA downstream 98325 2696409 ~ 2696697 (-) True G78769
TU116576 lncRNA downstream 307186 2487484 ~ 2487836 (-) True G78756
XR_006252118.1 lncRNA downstream 310094 2483695 ~ 2484928 (-) True LOC122354525
XR_006252103.1 lncRNA upstream 4237 2799533 ~ 2800028 (-) True LOC122354391
TU116670 lncRNA upstream 144856 2940152 ~ 2942206 (-) False LOC122354337
TU116698 lncRNA upstream 283718 3079014 ~ 3079668 (-) True G78848
TU116705 lncRNA upstream 319001 3114297 ~ 3114570 (-) True G78854
TU116765 lncRNA upstream 428439 3223735 ~ 3241319 (-) False G78899
XM_043252107.1 mRNA downstream 619094 1966493 ~ 2175928 (-) False ptprga
XM_043252106.1 mRNA downstream 619094 1966493 ~ 2175928 (-) True ptprga
XM_043252108.1 mRNA downstream 619095 1966493 ~ 2175927 (-) False ptprga
XM_043252529.1 mRNA downstream 831412 1953550 ~ 1963610 (-) True cse1l
XM_043251246.1 mRNA downstream 841925 1950040 ~ 1953097 (-) False LOC122353511
XM_043252685.1 mRNA upstream 12688 2807984 ~ 2811364 (-) True LOC122354490
XM_043252686.1 mRNA upstream 18056 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA upstream 18056 2813352 ~ 2816128 (-) True LOC122354491
XM_043252510.1 mRNA upstream 24292 2819588 ~ 2830067 (-) True LOC122354336
XM_043252511.1 mRNA upstream 144844 2940140 ~ 2942199 (-) True LOC122354337
unassigned_transcript_1680 other downstream 8076 2786874 ~ 2786946 (-) True trnai-aau_28
unassigned_transcript_1679 other downstream 8235 2786710 ~ 2786787 (-) True trnaf-gaa_28
unassigned_transcript_1678 other downstream 9802 2785148 ~ 2785220 (-) True trnaf-gaa_27
unassigned_transcript_1677 other downstream 10408 2784543 ~ 2784614 (-) True trnap-cgg_6
unassigned_transcript_1676 other downstream 11216 2783733 ~ 2783806 (-) True trnai-aau_27
TU116656 other upstream 18209 2813505 ~ 2816110 (-) False LOC122354491
TU116669 other upstream 33445 2828741 ~ 2830203 (-) False LOC122354336
unassigned_transcript_1681 other upstream 41987 2837283 ~ 2837354 (-) True trnaf-gaa_29
unassigned_transcript_1682 other upstream 42945 2838241 ~ 2838312 (-) True trnap-ugg_7
unassigned_transcript_1683 other upstream 43551 2838847 ~ 2838919 (-) True trnaf-gaa_30

Expression Profile