Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043252687.1 |
| length | 1400 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC122354491 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056709.1 |
| NCBI id | CM032078.1 |
| chromosome length | 24513629 |
| location | 2813352 ~ 2816128 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0048821 | erythrocyte development | biological_process |
| GO:0003190 | atrioventricular valve formation | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0035912 | dorsal aorta morphogenesis | biological_process |
| GO:0045637 | regulation of myeloid cell differentiation | biological_process |
| GO:0021514 | ventral spinal cord interneuron differentiation | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006252103.1 | lncRNA | downstream | 13324 | 2799533 ~ 2800028 (-) | True | LOC122354391 |
| TU116596 | lncRNA | downstream | 18056 | 2795022 ~ 2795296 (-) | True | G78774 |
| TU116595 | lncRNA | downstream | 112623 | 2700513 ~ 2700729 (-) | True | G78773 |
| TU116593 | lncRNA | downstream | 115880 | 2697228 ~ 2697472 (-) | True | G78771 |
| TU116591 | lncRNA | downstream | 116655 | 2696409 ~ 2696697 (-) | True | G78769 |
| TU116670 | lncRNA | upstream | 124024 | 2940152 ~ 2942206 (-) | False | LOC122354337 |
| TU116698 | lncRNA | upstream | 262886 | 3079014 ~ 3079668 (-) | True | G78848 |
| TU116705 | lncRNA | upstream | 298169 | 3114297 ~ 3114570 (-) | True | G78854 |
| TU116765 | lncRNA | upstream | 407607 | 3223735 ~ 3241319 (-) | False | G78899 |
| TU116775 | lncRNA | upstream | 414999 | 3231127 ~ 3232742 (-) | True | G78903 |
| XM_043252685.1 | mRNA | downstream | 1988 | 2807984 ~ 2811364 (-) | True | LOC122354490 |
| XM_043252107.1 | mRNA | downstream | 637424 | 1966493 ~ 2175928 (-) | False | ptprga |
| XM_043252106.1 | mRNA | downstream | 637424 | 1966493 ~ 2175928 (-) | True | ptprga |
| XM_043252108.1 | mRNA | downstream | 637425 | 1966493 ~ 2175927 (-) | False | ptprga |
| XM_043252529.1 | mRNA | downstream | 849742 | 1953550 ~ 1963610 (-) | True | cse1l |
| XM_043252510.1 | mRNA | upstream | 3460 | 2819588 ~ 2830067 (-) | True | LOC122354336 |
| XM_043252511.1 | mRNA | upstream | 124012 | 2940140 ~ 2942199 (-) | True | LOC122354337 |
| XM_043252373.1 | mRNA | upstream | 180371 | 2996499 ~ 3037108 (-) | True | camk1b |
| XM_043252372.1 | mRNA | upstream | 180371 | 2996499 ~ 3037072 (-) | False | camk1b |
| XM_043251707.1 | mRNA | upstream | 230610 | 3046738 ~ 3048224 (-) | True | spcs1 |
| unassigned_transcript_1680 | other | downstream | 26406 | 2786874 ~ 2786946 (-) | True | trnai-aau_28 |
| unassigned_transcript_1679 | other | downstream | 26565 | 2786710 ~ 2786787 (-) | True | trnaf-gaa_28 |
| unassigned_transcript_1678 | other | downstream | 28132 | 2785148 ~ 2785220 (-) | True | trnaf-gaa_27 |
| unassigned_transcript_1677 | other | downstream | 28738 | 2784543 ~ 2784614 (-) | True | trnap-cgg_6 |
| unassigned_transcript_1676 | other | downstream | 29546 | 2783733 ~ 2783806 (-) | True | trnai-aau_27 |
| TU116669 | other | upstream | 12613 | 2828741 ~ 2830203 (-) | False | LOC122354336 |
| unassigned_transcript_1681 | other | upstream | 21155 | 2837283 ~ 2837354 (-) | True | trnaf-gaa_29 |
| unassigned_transcript_1682 | other | upstream | 22113 | 2838241 ~ 2838312 (-) | True | trnap-ugg_7 |
| unassigned_transcript_1683 | other | upstream | 22719 | 2838847 ~ 2838919 (-) | True | trnaf-gaa_30 |
| unassigned_transcript_1684 | other | upstream | 23683 | 2839811 ~ 2839881 (-) | True | trnap-cgg_7 |
