RNA id: XM_043252010.1


Basic Information

Item Value
RNA id XM_043252010.1
length 1542
RNA type mRNA
GC content 0.45
exon number 2
gene id camk2n1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3270199 ~ 3272619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCCAAGATTAATATTGGCGATAGCTGCAATGAAAGAGCTGGAGAGGAAGCCCGCGCCTCAGTGACGTTCATTCTCCATCAGGGATCTTTGTTTTGCATCGCTTCCCaatttgcatttgtttctcAGGTTTTCCATACGACGCTCCAGCCGCCGCCAAGCCCCGAGAGCGCAAAGGCGCATTCCTCCGCGATCCGTTCGCCTCTCCAGCGTTGGGAACGTTTGAAGGAACCGACTCGGGCTCGAACCGAACGAAGGAAATTACATGCGTTCGCCTCTCCTCCTCGCCATCCACTCGAGGAGACACGTGCGGTAGAGGTAAACAGCCCAGAGATCCGCTCCACGAAATTCACCTCGCGCTATCGATACAGTAGCCGCTGTCGGTTCATACAGCATGTCGGATGTATTACCGTACAACGAGGACAAAATGACTCATTATGGCAACGACGGCGACGAGGAACACCTTTCCTTCACCTGCCGCCTCCAAGACACCAACAACTTTTTCGGTGGCAACCAGAATAAACGACCACCAAAGCTGGGGCAGATCGGGAGAAGCAAAAGAGTCGAGGAAGACAACGATGGCGAAGCAATGGACAAGAGCTCAGAGAAGTCTTCTACGGCGTGAACGGACCCAAAGACTCTTAACCTCTCTGATGTGTATATCCAAAGACGTTGTGAAGAGGCACTCTCTCCCATCTGGCGACAAGCACTCCACGCATTCTCCTCTCGATCTCCCAAACTCCATTGTCCAGGGTTTACGGCGTGAACCGGCGGTCCGGAAGAGCGGCCCAGGGGCTTGAAGGAATACTGTGTTTTCCAAACTATACTCCGAGATATGTGCAATGACAGGGTTCGGTCTCGTTAGAGACCggattcttcttttttatttgttttttttttgttgttctaatGAAGCAATTCGATTGAGACTGAGCAAACGGTACCATTAACATCAAACCAGTATCTTCCCACTTAACCCAGTAGCCTACTGGTGGTGTTAATGGTACACTAGCAATGTTGACCTTTTCTTCCAAGAGTGGACCTCCAAAGAGGTTCCACTAcgtatgtgtaaaaaaaaaagaagctatttATTAAATCTTTGGATACATATTTTGCAGTGTTGAAGGTTGAGCAACCGTTTTATATAATGGAACGATGACGAGAAGTGACTTTTGCTTTAGATAGATGTTTTGTATGTAGCTTAACTGTGATTCTCGTGATctgcttcatttcatttgatgttCGGTTCGATCTGGAATGTCAGTTTAAGGACAGTAACCTTATTATCGTAAAGCATATTAACTGTAGATGTGCCAAATTTATCCTGAAGAGAAACGTACCTTTCTGTGCTTTCTTCACGCGCACAGGTTTATTAATATTCGGTGGTCATGTTTACAGGGCTCTTTCATACTACTTGTGATGTATTCTAGTCATGCATGACGAACCTCGAGACCTCAAGAACGTCTTCTTGAATATATTACGTATTTATCTCACAGAACATTTCTACAGAATATCTGTtataataaagattttgagaAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116652 lncRNA upstream 154391 3115425 ~ 3116430 (+) True G78815
TU116630 lncRNA upstream 267830 3001119 ~ 3002991 (+) True G78797
TU116609 lncRNA upstream 457539 2812377 ~ 2813282 (+) True G78784
TU116594 lncRNA upstream 570118 2700395 ~ 2700703 (+) True G78772
TU116577 lncRNA upstream 782268 2488214 ~ 2488553 (+) True G78757
TU116746 lncRNA downstream 15591 3288201 ~ 3291400 (+) True G78886
TU116758 lncRNA downstream 113671 3386281 ~ 3391193 (+) False tmem167b
TU116759 lncRNA downstream 118954 3391564 ~ 3391790 (+) True G78898
TU116921 lncRNA downstream 267378 3539988 ~ 3541069 (+) True G79002
TU116950 lncRNA downstream 429135 3701745 ~ 3702033 (+) True G79021
XM_043252513.1 mRNA upstream 3545 3263629 ~ 3267276 (+) True si:dkey-33m11.7
XM_043252003.1 mRNA upstream 16972 3244829 ~ 3253849 (+) False dnajc16l
XM_043252004.1 mRNA upstream 16972 3244848 ~ 3253849 (+) True dnajc16l
XM_043252001.1 mRNA upstream 29562 3225810 ~ 3241259 (+) True itih3a.1
XM_043252002.1 mRNA upstream 45203 3212989 ~ 3225618 (+) True itih3a.2
XM_043252005.1 mRNA downstream 6191 3278801 ~ 3285540 (+) True ddx19b
XM_043252380.1 mRNA downstream 27773 3300383 ~ 3352012 (+) False acap3b
XM_043252381.1 mRNA downstream 27774 3300384 ~ 3356156 (+) True acap3b
XM_043251594.1 mRNA downstream 85600 3358210 ~ 3361658 (+) False LOC122353713
XM_043251593.1 mRNA downstream 89193 3361803 ~ 3377622 (+) True hipk1b
TU116622 other upstream 444027 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 590679 2678135 ~ 2680142 (+) True G78763
XR_006252148.1 other upstream 1392694 1878021 ~ 1878127 (+) True LOC122354697
unassigned_transcript_1620 other upstream 1393907 1876831 ~ 1876914 (+) True trnas-gcu_27
unassigned_transcript_1619 other upstream 1394132 1876619 ~ 1876689 (+) True trnap-agg_19
TU116739 other downstream 85649 3358259 ~ 3361290 (+) True LOC122353713
XR_006252154.1 other downstream 474040 3746650 ~ 3746742 (+) True LOC122354703
XR_006252155.1 other downstream 474317 3746927 ~ 3747012 (+) True LOC122354704
unassigned_transcript_1800 other downstream 511354 3783964 ~ 3784035 (+) True trnaq-cug_17
unassigned_transcript_1801 other downstream 634906 3907516 ~ 3907588 (+) True trnaq-cug_18

Expression Profile