RNA id: TU116767


Basic Information

Item Value
RNA id TU116767
length 3239
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id G78899
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3223735 ~ 3241319 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtcattttctgAGTTTTATATTGTATGGTGAAGATTTTGTAATAACAGATGCAACAGATGTTTACAGatgcttttttattacaaatcTAGTGCAATGCTGTAATCaagtctttaaaaaatgttagaaattgtatgaatatgaaaataaagcatgaGTGGCGCATATTATATATGCGTATCAAATTGACTGGCTTTGCCGCCTTAACTGTGAACCAaacaaaatgagtttaaatACCATTTCAGTATCTGATTAttgaaaaatctgtattttgatGCGAAAGCAATTTGTTGTTGGGATTGTTATTTTGATGATAacatgttcctttttttttgaagtCTTCCTCTGGTTCATTATAGCTGTCGGTCATCATTTTCTCTGGCTTTCATGGCTCGCTGTTAGATTGTCTTGAAGAGACCGGAGACGATGTAGTCTGTGTGAACTCCATCGAGGAGCCCGGTGCCGTTATTGTGAATGAACCAACAGGGCACATTTTCTCCGTTCTTCACGTCCTGTCTGAAATCTTTCTGCCAACCCCTGTTGTCACAGAATAACACAGAATTAAGGTGATATCAAACTTTCATGTTCAAAAAGGGAAAACGTGTCTTAAATTCACCTGGTAACTATAAGTTCTTGTCCCTTCACCAACATCATGGCATCTGGTTTGTTTGGATCCCTTCCTGGAAACGTTTCACTCACTTCAAACTGCAGTCCATGGTAGAACTGACaagcaTTCCATGGACATTGCTTGAAAAGAGGTGACTGTCCAATGTGTAGAACCCGAGGTAGTCTTGATGGTATGGGTGTTTCTGCCAGACTTTGTGCAGGATGATAAGAAACTTGACTGAGTTCCTTAGGGTCACTGTTAAACTGCGATCTTTGATCACGTGCAGATCCATGCTGGAGAAAGAAGGACAAAGTTCTCTCAGGGTTATAAGTCTTTCCTCCATTCCTTTCTGAAAGGGTTCTTTCAGTTAGCTCAAAATGTAGTGATATTCTGAATCTTACTTGGGCCCTTTAACTGTTGCCGTGTCAGTCCAGAAGAATTTTGCTCGTTTTCCCTTTTCAGACACTACGATCTCCTTTGTGCTCACCATCAATCTGATACCAAACTTCTCATGAACAATCCCAAACCGCCCAAAATAGGTGTGCATTGTGCTTCCTGGGATGACTTTCTTATCTCCAATGGTTTGGCCATTGACCACAATACTGTAAGTGAATCTCTAACCAGGTTAAAGATGGTACCAGGTTTGTCATCAATGTTGAAGCAAAGAGCATCGTTCTGGTCTGGCAGCTCAATGATGAAATGTGGATCTCCATCAACTGTTACATTTGTTTAGCAAATTGTTAGAAATGCTCTGCTGATATGAAAAATACAGCATTGGCGGTTAGGTAtgctttgctggtttaagctggtgcTTTGCTGGTTTCTACCGGTCCTTTGCTAGGTTTTAAGCTGGTCAGACCAGCTTAGCACCAGTGcatgaccagcataaaccagcaaaggaccagcttaaacaagcatcccagcttcaaaacttACCTCACCAGCATTTTTTCAACAGGGAAGCTTTACCTACTTGACCAGTgaatatagttttatagtatatttacCATAATATGTGGGTGCAGTGTACTTGGGGTAGCTGTACGCTATGCCTGTGTAACCTGCAAATAAGACAATgattgaactaaaataaatgctgtggaATAGctaacatatttcaaatatgaaaaaaagtaaatgaagctttcttttttaagtCATGACATATCAAACTGTTCCCAGGTCCAAATCGCAAGTAAGAATATTACCTCAATGGTTCATTAGcactattaatttttaatgcaccTTAAAGCTATAAAAAAGTGTCCCTGGGTCACAGTGTCAAGGACactactattttaataatttattatcacGGTCAACTAAGATTTTGTTATGAAGGTAAAGATTGGCATCATGAGTTTTAGTTGTGTAGCATTTTAACCAATCAGACACCAAGTATTTGTTCTAGTTAACCAGTAATCTTTAATGCCCCTTTCCCCAACCAAAGGGCTAATAAAGTGTATCTAGGAAGTTCAAGCGACAAACATATTCGTTGATGGCAATgtaattctgctacagttactactggcagctgatataaatatttgcaattagtcataattaattgtaattatcgatatatatatattgccccttaataagctgatttgctaCAGTTGTAATACAGCAACAAGTTCATGAATTAGAACTGTTTGCTTTTGGATCTTAGGAGCAAAAACTGGGACTCATGACTTGATACTTtaataaccaaataaatatgTACCAGTGTAACACTTACcatatttttggacatttcCTCGTTCCTCTgtgaataaatgttgaaaagagTGAGTGTGATGTAGCTGATcaaacatatatttacaaattaatgGGAAACTTCAGTTTAGTCATACCTTCAGTCAGCTTGTCAGCAATAAATGTGTCGTTTTTAGTCTCATCTTCAGGTTTGGTGACAACCATGGAGGTAAGTGGCGTAACAAAGTTGTACTTTAACGAAAGGTGCAGAGCTTTTTCAGTGGCATTTCCTTTCTCCTCTGGTGTACCCTTGTCTCtggcagaaaatatatatattttttgtaattagatTTGATTCAGATCTTTCGCGTAAgaatttaaattagtaaaaataatttagatcATGCTTTTTCAAACAGACTTTGTATCTAGTAGCTCCTGGATGGTCATATATGCCCAGAGACGCTCAGTAAAGTCCCCAAATATATACTCTTCACCAGGAAATATGGTTTCCCACTTCTGAGTATTCGCTTGACCTTTCAGCTCAACGTTATTTTGGACCCTTGTGCGGACACTTCAATTGCGAAGTTGTCTATTTCATTTAAGTCATTAAGTTGACCAGCGACCATGATCTCAGAGCCGTTGAAGAGCtgtttaaaatggctttttgtCAGTGAGTTAACTGCGTTGTCCGGATAGCGAAAATGCACGTCTGAGAGCAAAGGACTTGAGACTTCTTCATAAAATCCCTTAGCTGAAGTGGGGCATCCGAGTCCTCATAAATCCTGCGAACCAATCCATTATTCTGCTTGCTCAAAGTATCCAAAAATCCATAGTTTGCGTCTTTACCAAAAGCCAAACTGAACAGAGTGATATTCCCATCAATGGCGTGACGAATGCTCTCTTGGATCTCAGGAAGAGTTCTCGgatctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116768 lncRNA downstream 132 3233259 ~ 3234678 (-) False G78899
TU116775 lncRNA downstream 2068 3231127 ~ 3232742 (-) True G78903
TU116705 lncRNA downstream 120240 3114297 ~ 3114570 (-) True G78854
TU116698 lncRNA downstream 155142 3079014 ~ 3079668 (-) True G78848
TU116670 lncRNA downstream 292604 2940152 ~ 2942206 (-) False LOC122354337
TU116782 lncRNA upstream 12544 3253863 ~ 3254526 (-) False cdab
TU116793 lncRNA upstream 24865 3266184 ~ 3266672 (-) True G78918
TU116794 lncRNA upstream 25437 3266756 ~ 3267675 (-) True G78919
TU116869 lncRNA upstream 171555 3412874 ~ 3414924 (-) False G78969
TU116871 lncRNA upstream 171555 3412874 ~ 3414924 (-) True G78969
XM_043251705.1 mRNA downstream 176380 3052696 ~ 3058430 (-) True gnl3
XM_043251707.1 mRNA downstream 186586 3046738 ~ 3048224 (-) True spcs1
XM_043252373.1 mRNA downstream 197702 2996499 ~ 3037108 (-) True camk1b
XM_043252372.1 mRNA downstream 197738 2996499 ~ 3037072 (-) False camk1b
XM_043252511.1 mRNA downstream 292611 2940140 ~ 2942199 (-) True LOC122354337
XM_043252009.1 mRNA upstream 12544 3253863 ~ 3256212 (-) True cdab
XM_043252011.1 mRNA upstream 15560 3256879 ~ 3264114 (-) True si:dkey-33m11.8
XM_043252008.1 mRNA upstream 44642 3285961 ~ 3299062 (-) False pusl1
XM_043252007.1 mRNA upstream 44642 3285961 ~ 3299062 (-) True pusl1
XM_043252883.1 mRNA upstream 140166 3381485 ~ 3385791 (-) True si:ch211-160o17.6
TU116704 other downstream 121118 3112933 ~ 3113692 (-) True G78853
XR_006252153.1 other downstream 179037 3055697 ~ 3055773 (-) True LOC122354702
TU116673 other downstream 186752 3046747 ~ 3048058 (-) False spcs1
unassigned_transcript_1799 other downstream 248279 2986458 ~ 2986531 (-) True trnai-aau_68
unassigned_transcript_1798 other downstream 249693 2985044 ~ 2985117 (-) True trnaf-aaa
TU116923 other upstream 298682 3540001 ~ 3541055 (-) True G79003
XR_006252141.1 other upstream 437443 3678762 ~ 3678926 (-) True LOC122354690
TU117055 other upstream 572314 3813633 ~ 3823098 (-) False LOC122354343
TU117044 other upstream 671929 3913248 ~ 3914635 (-) True G79085
TU117068 other upstream 721595 3962914 ~ 3965777 (-) False si:dkey-197i20.6

Expression Profile