RNA id: TU116793


Basic Information

Item Value
RNA id TU116793
length 489
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G78918
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3266184 ~ 3266672 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCTTTTCCTCCTGAGCTGGACCCAGCGCAGATCATGTTTGTTGTGATGTTTCCGCTGAAGGAGTTGCTGCTGTTGCACTTGGAGCTGGAGACGATGGGGAGTTTGACCGTGCGAAGGGTGAGGGGCGTCAAACCTCCGCTGTGGCTGGTGGAGCCCCAGCCAGACACCCGGCACATCTTACCCGCCAACAGCCCTGCGCTTTGTTTGGGGAGCGGGGCGAGGGACACGTACCTGTTGAGCTCTATGGGTGCACTAAGCTGAaatacaacatccagagacagacatacagagtatatataaaatcaaacttaatattaactaacattGTATAGTAAGTAAAGAAGAAACTATTGGAGTATGTTTTactgaaagtgcactgtgtataatGAGGGGAATCAACTCATAATCACACgaggacaggaacaggaaggaccAAATATGGGCATGGAGAAACTGAGTCAAGGCAGGCACATGgggaataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116782 lncRNA downstream 11658 3253863 ~ 3254526 (-) False cdab
TU116769 lncRNA downstream 24865 3233259 ~ 3241319 (-) True G78899
TU116760 lncRNA downstream 24865 3234810 ~ 3241319 (-) False G78899
TU116767 lncRNA downstream 24865 3234810 ~ 3241319 (-) False G78899
TU116764 lncRNA downstream 24865 3237551 ~ 3241319 (-) False G78899
TU116794 lncRNA upstream 84 3266756 ~ 3267675 (-) True G78919
TU116869 lncRNA upstream 146202 3412874 ~ 3414924 (-) False G78969
TU116871 lncRNA upstream 146202 3412874 ~ 3414924 (-) True G78969
TU116931 lncRNA upstream 387610 3654282 ~ 3657289 (-) True G79010
TU117014 lncRNA upstream 450017 3716689 ~ 3719414 (-) True G79069
XM_043252011.1 mRNA downstream 2070 3256879 ~ 3264114 (-) True si:dkey-33m11.8
XM_043252009.1 mRNA downstream 9972 3253863 ~ 3256212 (-) True cdab
XM_043251705.1 mRNA downstream 207754 3052696 ~ 3058430 (-) True gnl3
XM_043251707.1 mRNA downstream 217960 3046738 ~ 3048224 (-) True spcs1
XM_043252373.1 mRNA downstream 229076 2996499 ~ 3037108 (-) True camk1b
XM_043252008.1 mRNA upstream 19289 3285961 ~ 3299062 (-) False pusl1
XM_043252007.1 mRNA upstream 19289 3285961 ~ 3299062 (-) True pusl1
XM_043252883.1 mRNA upstream 114813 3381485 ~ 3385791 (-) True si:ch211-160o17.6
XM_043252514.1 mRNA upstream 187738 3454410 ~ 3456934 (-) True lhfpl5a
XM_043251425.1 mRNA upstream 417137 3683809 ~ 3688273 (-) True LOC122353608
TU116704 other downstream 152492 3112933 ~ 3113692 (-) True G78853
XR_006252153.1 other downstream 210411 3055697 ~ 3055773 (-) True LOC122354702
TU116673 other downstream 218126 3046747 ~ 3048058 (-) False spcs1
unassigned_transcript_1799 other downstream 279653 2986458 ~ 2986531 (-) True trnai-aau_68
unassigned_transcript_1798 other downstream 281067 2985044 ~ 2985117 (-) True trnaf-aaa
TU116923 other upstream 273329 3540001 ~ 3541055 (-) True G79003
XR_006252141.1 other upstream 412090 3678762 ~ 3678926 (-) True LOC122354690
TU117055 other upstream 546961 3813633 ~ 3823098 (-) False LOC122354343
TU117044 other upstream 646576 3913248 ~ 3914635 (-) True G79085
TU117068 other upstream 696242 3962914 ~ 3965777 (-) False si:dkey-197i20.6

Expression Profile