RNA id: TU116970


Basic Information

Item Value
RNA id TU116970
length 886
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC122353534
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3746093 ~ 3747491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAACTCGGGTTCGCACGCTCTTTCTTCCCAGTTCCGTCTTCTTTGTGAGAGGTAGGCAATGTTCTTTAATTTTAACAcgttacttaaatttttttaaaaatagaagtttatctaaatgaaatgcttttagaAGCACGTCGCCTACGTTCAAAAGTAatgctaaaaactaaaactaaggATTTTGGTGTCGTTCCGCGCTGACCACGTGGCTCGTTTTCGGTGCACGTGGGGAAGTTATAGACCGTGAAAACTTGGCTGGTTTATAGTCTTATACGGATTAGTACGTATGCTAGTTAGTAAGAAGGATAAACAAGTTGCTTGATATTAAATTGCCAACGTTTCATATTGGCAGTTTTTTAAGCGATTTTGCAGTACGTTGTTTTCAGTCGCCAAAATATGATCAACAATATTCTCAATTTCTTTTTTGTCGTGCAGTATGGGGGCTGTTGGACCATGGCTCTTTCCTATAGCGCTTACTCCGATTTTGATCATACTGGAGCCTAATGGATGACCTGTGGAGTCTCCAAGACTCTTGAGTCTCTTGGAACTCCAAACCCGGAACAATTCTGTAATTCAAGAGGAACTTGCACCTTTTTGAATGGCCACACAAGTAAAACTGAGGTGTTTGAGCACTCTGTGCCGATGAAGACCCCCCTCAGAGCCAAGTGGCTGAAGTACACAGGCTTTCTCGACGCGGCAAAGGAGAGGAAAGACCTTTCTGAGTCTTAAAGTGGCTTTTATGACCTAGTCTTCCAACGTGATGTTTTTAGAGGCTGTTTGATCCATTTCTCAGAATGCTGTCACTATTGCTTGCAACTTCTATGCAAGTGTAGGTCTTATAGCTGGTAGTTGCTGCTTTCTTGTACAATAAAACTCTTAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116951 lncRNA upstream 20025 3704241 ~ 3726091 (+) True G79022
TU116950 lncRNA upstream 44083 3701745 ~ 3702033 (+) True G79021
TU116921 lncRNA upstream 205047 3539988 ~ 3541069 (+) True G79002
TU116759 lncRNA upstream 354326 3391564 ~ 3391790 (+) True G78898
TU116758 lncRNA upstream 354923 3386281 ~ 3391193 (+) False tmem167b
TU116971 lncRNA downstream 1098 3748587 ~ 3749486 (+) True G79039
TU116975 lncRNA downstream 27415 3774904 ~ 3775881 (+) False nwd1
TU116977 lncRNA downstream 31698 3779187 ~ 3779599 (+) False nwd1
TU116965 lncRNA downstream 48933 3796422 ~ 3929528 (+) True LOC122354455
TU116968 lncRNA downstream 52984 3800473 ~ 3858370 (+) True G79037
XM_043251579.1 mRNA upstream 15341 3725260 ~ 3730775 (+) True LOC122353704
XM_043252865.1 mRNA upstream 88827 3543699 ~ 3657289 (+) True cpne5b
XM_043252866.1 mRNA upstream 88827 3543700 ~ 3657289 (+) False cpne5b
XM_043252867.1 mRNA upstream 93417 3543698 ~ 3652699 (+) False cpne5b
XM_043252398.1 mRNA upstream 213943 3467547 ~ 3532173 (+) False kif21b
XM_043252331.1 mRNA downstream 5467 3752956 ~ 3759693 (+) True tmem38a
XM_043252330.1 mRNA downstream 14057 3761546 ~ 3769572 (+) True thop1
XM_043251553.1 mRNA downstream 24066 3771555 ~ 3785342 (+) True nwd1
XM_043251546.1 mRNA downstream 44416 3791905 ~ 3795946 (+) True reep6
XM_043252649.1 mRNA downstream 48917 3796406 ~ 3798064 (+) False LOC122354455
TU116739 other upstream 384826 3358259 ~ 3361290 (+) True LOC122353713
TU116720 other upstream 473497 3270199 ~ 3272619 (+) False camk2n1
TU116721 other upstream 473497 3270683 ~ 3272619 (+) True camk2n1
TU116622 other upstream 919322 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 1065974 2678135 ~ 2680142 (+) True G78763
unassigned_transcript_1800 other downstream 36475 3783964 ~ 3784035 (+) True trnaq-cug_17
unassigned_transcript_1801 other downstream 160027 3907516 ~ 3907588 (+) True trnaq-cug_18
XR_006252088.1 other downstream 313441 4060930 ~ 4149729 (+) False adgrl2a
XR_006252089.1 other downstream 313441 4060930 ~ 4149697 (+) False adgrl2a
XR_006252072.1 other downstream 620937 4368426 ~ 4375388 (+) False prkacba

Expression Profile