RNA id: TU118110



Basic Information


Item Value
RNA id TU118110
length 896
lncRNA type sense_over
GC content 0.37
exon number 2
gene id bsnb
representative False

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8075419 ~ 8150569 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGGAAATGAAAGGTAAAGTAGAAATTGAGAGAAAATACCAGAGCAGATTGGCACAGGTGACCCAAACctgttgtctgtgtgtgtctttctgtaATTAACCCTTGTCCAATGGGTATTGAGTGTGTTCATCTGCTGTTTGTTTGAATGACAAGTGCAgacatgtctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaactgtcgCTGTAAATACTGACTTTGGTTATTTTGTACAGTGTTTAAATATCATGAGTAAAATGATGGCCGTCTTGTGCAACTTCACGCCGGCCTTGCTGCCAAccttttgtgcttttgtgtataaaagaataatgatgattgttgttattattatgagaaaaaaattatcataGTACATGTTGCTGGCTCTCAATGACTGTTGACTACagtggaaaaaatgaaaaacgtaCAATCTGAAATCATTTGGTCTGTGTAGGGGTTCtatattgtgtttattaaatctaaatacaatgaaaaatacGTAAGTGGCTTCCATCACGACCGCGCCAGAAAAGAGGGTTCAGAGTGATTTAGCGGCTGTATTATAAATTTAATCGGGAATTGGGAAAAACAAcacgggaaaaaaaagaagaaaaatgctCTCACGAATGAAAATTCACTCACTGTTGTAAGTGCAATGGGCTAAATGTGAGTCCAGTattcattgtgaaatattgtgttCTTTTCAATGTATTCCTGTTAAAAAGATAAATTTTGGTGCATCATGTCATGTAATGTgattatgaaaataatgaacCTGCAATTTGTTTCCAGACTGGAGaagaataaagacaaaaaattcaaatttacaCTCTCTCTTGTGTTTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118059 lncRNA upstream 218592 7873789 ~ 7880398 (+) True G79813
TU117968 lncRNA upstream 268679 7829953 ~ 7830311 (+) True G79748
TU117947 lncRNA upstream 357549 7737617 ~ 7741441 (+) False elk4
TU117936 lncRNA upstream 600801 7486210 ~ 7498189 (+) False LOC122354645
TU118138 lncRNA downstream 51154 8201723 ~ 8202344 (+) True G79863
TU118140 lncRNA downstream 51333 8201902 ~ 8202344 (+) False G79863
TU118143 lncRNA downstream 53937 8204506 ~ 8204923 (+) True G79864
TU118147 lncRNA downstream 54428 8204997 ~ 8205706 (+) True G79865
TU118144 lncRNA downstream 54856 8205425 ~ 8205706 (+) False G79865
XM_043251379.1 mRNA upstream 52036 8042338 ~ 8046954 (+) False zgc:158258
XM_043251380.1 mRNA upstream 52036 8042339 ~ 8046954 (+) False zgc:158258
XM_043251378.1 mRNA upstream 52036 8042350 ~ 8046954 (+) True zgc:158258
XM_043251296.1 mRNA upstream 58364 8035867 ~ 8040626 (+) False yod1
XM_043251295.1 mRNA upstream 58364 8035959 ~ 8040626 (+) True yod1
XM_043252310.1 mRNA downstream 3363 8153932 ~ 8201269 (+) True erc2
XM_043252312.1 mRNA downstream 3363 8153932 ~ 8201269 (+) False erc2
XM_043252311.1 mRNA downstream 3363 8153932 ~ 8201269 (+) False erc2
XM_043251960.1 mRNA downstream 72787 8223356 ~ 8229586 (+) True LOC122354006
XM_043251629.1 mRNA downstream 144307 8294876 ~ 8301978 (+) True ninj1
TU117808 other upstream 1274445 6823576 ~ 6824545 (+) False G79640
TU117441 other upstream 2782123 5286543 ~ 5316867 (+) False megf6b
XR_006252072.1 other upstream 3723602 4368426 ~ 4375388 (+) False prkacba
XR_006252088.1 other upstream 3949261 4060930 ~ 4149729 (+) False adgrl2a
TU118181 other downstream 130246 8280815 ~ 8282901 (+) True G79889
TU118437 other downstream 451618 8602187 ~ 8604284 (+) True G80058
TU118487 other downstream 667821 8818390 ~ 8819279 (+) True G80095
TU118515 other downstream 729082 8879651 ~ 8881476 (+) False setmar
TU119130 other downstream 2316053 10466622 ~ 10471187 (+) True G80551

Expression Profile