RNA id: XM_043252195.1


Basic Information

Item Value
RNA id XM_043252195.1
length 536
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC122354145
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11505653 ~ 11507771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTCCGCGGAGTTCGTGCGCTGCGTGAGGAGAGAGTGAGCAGCTTTCGGAGGAGTCGGTGCGCGGCGGAGCGGCGTGTTTTCGGGCGTTCAGGGCTGATATCTGCGGTCTTCCATCATGCATGTGGACTTCGAGAAGCTGCGGATGAGCGGCGCGGGGAAAGCCATCGCGGTGCTGACGAGCGGCGGAGACGCGCAGGGTATGAACGCCGCCGTCCGCGCTGTAACACGCATGGGCATTTACGTGGGCGCTAAGGTCTACCTGATTTACGAGggttatcagGGTCTGGTGGACGGAGGAGATCACATCAAACTCGCCAACTGGCAGAGCGTCACCAACATCATCCAGCTGGTGAGACGTGCTTTCAGTGCGTGTGAAAATCACTCAGACAGAAACTCCACGAAGAACAAAAAAGGttgattaataacaaaatagaGTCGGATGGAGGGCTTGAGGAAATGCTAGAAATATGGAGCAagtcatattttaattacagataaagacaaatataataattttatgaaaatgctCTATT

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119503 lncRNA upstream 33352 11471971 ~ 11472301 (+) True G80804
TU119287 lncRNA upstream 53515 11449049 ~ 11452138 (+) True G80668
XR_006252074.1 lncRNA upstream 58132 11443640 ~ 11447521 (+) True LOC122353945
XR_006252073.1 lncRNA upstream 58133 11443647 ~ 11447520 (+) False LOC122353945
TU119286 lncRNA upstream 66927 11437907 ~ 11438726 (+) True G80667
TU119508 lncRNA downstream 283 11508000 ~ 11509053 (+) True G80808
TU119509 lncRNA downstream 3757 11511474 ~ 11511894 (+) True G80809
TU119516 lncRNA downstream 41898 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 49245 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 63385 11571102 ~ 11571431 (+) True G80825
XM_043252196.1 mRNA upstream 5731 11486516 ~ 11499922 (+) True orc2
XM_043251850.1 mRNA upstream 20171 11470319 ~ 11485482 (+) True ldb1b
XM_043251852.1 mRNA upstream 71129 11424607 ~ 11434524 (+) False cant1b
XM_043251851.1 mRNA upstream 71129 11426756 ~ 11434524 (+) True cant1b
XM_043251854.1 mRNA upstream 81439 11417605 ~ 11424214 (+) False afmid
XM_043252192.1 mRNA downstream 4616 11512333 ~ 11523658 (+) True LOC122354143
XM_043251321.1 mRNA downstream 17306 11525023 ~ 11526933 (+) False rpl37a
XM_043252731.1 mRNA downstream 21002 11528719 ~ 11535114 (+) True eif4a3
XM_043252522.1 mRNA downstream 31961 11539678 ~ 11547713 (+) True opn6a
XM_043251529.1 mRNA downstream 90073 11597790 ~ 11599698 (+) True map1lc3c
TU119444 other upstream 279031 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 843683 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 1034466 10466622 ~ 10471187 (+) True G80551
TU118515 other upstream 2624177 8879651 ~ 8881476 (+) False setmar
TU118487 other upstream 2686374 8818390 ~ 8819279 (+) True G80095
TU119512 other downstream 17342 11525059 ~ 11527042 (+) True rpl37a
TU119513 other downstream 21017 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 72309 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other downstream 72309 11580026 ~ 11660942 (+) True LOC122354243
TU119601 other downstream 190647 11698364 ~ 11700214 (+) False tomm20b

Expression Profile