RNA id: XM_043251321.1


Basic Information

Item Value
RNA id XM_043251321.1
length 459
RNA type mRNA
GC content 0.56
exon number 4
gene id rpl37a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11525023 ~ 11527042 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGGTCGCTATCCCATAATGCACGCGTCCGAGCTGGCAAAACCGCGCATGCGCAGTGGCTCGCTCTCTTTTGGATCGGCACCTCTTCTGCTAAAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTGGGGAAGTACGGCACCCGTTACGGAGCGTCCCTCAGGAAGATGGTGAAGAAGATCGAGATCAGCCAGCACTCGAAATACACCTGCTCCTTCTGCGGCAAGACTAAGATGAAGAGAAAGGCTGTAGGGATCTGGCACTGCGGCTCCTGCATGAAAACCGTGGCCGGAGGTGCCTGGACGTACAACACGACGTCCGCCGTCACGGTCAAGTCTGCCATCAAGCGTCTGAAGGAGCTGAAGGACCAGTAAACCGGACCCTGTTTTCTACTCgttcacttctttctttctgtggcTCGACGGAACCTCTCGTAATAAACCTGAGCGTTGAGCCGGA

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119509 lncRNA upstream 13129 11511474 ~ 11511894 (+) True G80809
TU119508 lncRNA upstream 15970 11508000 ~ 11509053 (+) True G80808
TU119503 lncRNA upstream 52722 11471971 ~ 11472301 (+) True G80804
TU119287 lncRNA upstream 72885 11449049 ~ 11452138 (+) True G80668
XR_006252073.1 lncRNA upstream 77503 11443647 ~ 11447520 (+) False LOC122353945
TU119516 lncRNA downstream 22682 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 30029 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 44169 11571102 ~ 11571431 (+) True G80825
XR_006252094.1 lncRNA downstream 130953 11657886 ~ 11672957 (+) False LOC122354243
TU119594 lncRNA downstream 155991 11682924 ~ 11683244 (+) True G80860
XM_043252192.1 mRNA upstream 1365 11512333 ~ 11523658 (+) True LOC122354143
XM_043252195.1 mRNA upstream 17306 11505653 ~ 11507717 (+) False LOC122354145
XM_043252196.1 mRNA upstream 25101 11486516 ~ 11499922 (+) True orc2
XM_043251850.1 mRNA upstream 39541 11470319 ~ 11485482 (+) True ldb1b
XM_043251852.1 mRNA upstream 90499 11424607 ~ 11434524 (+) False cant1b
XM_043252731.1 mRNA downstream 1786 11528719 ~ 11535114 (+) True eif4a3
XM_043252522.1 mRNA downstream 12745 11539678 ~ 11547713 (+) True opn6a
XM_043251529.1 mRNA downstream 70857 11597790 ~ 11599698 (+) True map1lc3c
XM_043252117.1 mRNA downstream 171391 11698324 ~ 11700214 (+) True tomm20b
XM_043252113.1 mRNA downstream 179175 11706108 ~ 11715351 (+) True tbce
TU119266 other upstream 17252 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other upstream 17252 11505682 ~ 11507771 (+) True LOC122354145
TU119444 other upstream 298401 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 863053 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 1053836 10466622 ~ 10471187 (+) True G80551
TU119513 other downstream 1801 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 53093 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other downstream 53093 11580026 ~ 11660942 (+) True LOC122354243
TU119601 other downstream 171431 11698364 ~ 11700214 (+) False tomm20b
TU120019 other downstream 334009 11860942 ~ 11863112 (+) False LOC122353892

Expression Profile