RNA id: TU119535


Basic Information

Item Value
RNA id TU119535
length 282
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G80825
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11571102 ~ 11571431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtAGAAGCGGATGGTTAAGGTGACGGAGAAATGaagataaatactgtaaataccGGTTATTTTCTCTTGGCTCTGTCCCGTTTTAATCAGCAAAGTTGCTGCCGTGTTAAAATACAGGTTAGGAAAGGATCTATTTAGgtacatacatgtacatttacaattcaaaatcGTTCTGTTCCTGTagtaaatatctaaaaacatacatatctgtggcttgcaaaacttttttaaatagagcggatgcggtttatatgcaggtgcgctttatagtccagaatttac

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119526 lncRNA upstream 12055 11556962 ~ 11559047 (+) True G80819
TU119516 lncRNA upstream 15389 11549615 ~ 11555713 (+) True G80814
TU119509 lncRNA upstream 59208 11511474 ~ 11511894 (+) True G80809
TU119508 lncRNA upstream 62049 11508000 ~ 11509053 (+) True G80808
TU119503 lncRNA upstream 98801 11471971 ~ 11472301 (+) True G80804
XR_006252094.1 lncRNA downstream 86455 11657886 ~ 11672957 (+) False LOC122354243
TU119594 lncRNA downstream 111493 11682924 ~ 11683244 (+) True G80860
TU119595 lncRNA downstream 112029 11683460 ~ 11683944 (+) True G80861
TU119599 lncRNA downstream 119009 11690440 ~ 11694453 (+) True G80865
TU119567 lncRNA downstream 164941 11736372 ~ 11766054 (+) False G80847
XM_043252522.1 mRNA upstream 23389 11539678 ~ 11547713 (+) True opn6a
XM_043252731.1 mRNA upstream 35988 11528719 ~ 11535114 (+) True eif4a3
XM_043251321.1 mRNA upstream 44169 11525023 ~ 11526933 (+) False rpl37a
XM_043252192.1 mRNA upstream 47444 11512333 ~ 11523658 (+) True LOC122354143
XM_043252195.1 mRNA upstream 63385 11505653 ~ 11507717 (+) False LOC122354145
XM_043251529.1 mRNA downstream 26359 11597790 ~ 11599698 (+) True map1lc3c
XM_043252117.1 mRNA downstream 126893 11698324 ~ 11700214 (+) True tomm20b
XM_043252113.1 mRNA downstream 134677 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA downstream 134677 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA downstream 134677 11706108 ~ 11715351 (+) False tbce
TU119513 other upstream 41466 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 44060 11525059 ~ 11527042 (+) True rpl37a
TU119266 other upstream 63331 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other upstream 63331 11505682 ~ 11507771 (+) True LOC122354145
TU119444 other upstream 344480 11222347 ~ 11226622 (+) True G80761
TU119538 other downstream 8595 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other downstream 8595 11580026 ~ 11660942 (+) True LOC122354243
TU119601 other downstream 126933 11698364 ~ 11700214 (+) False tomm20b
TU120019 other downstream 289511 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 621323 12192754 ~ 12225492 (+) False G81213

Expression Profile