RNA id: TU119563


Basic Information

Item Value
RNA id TU119563
length 1029
lncRNA type intronic
GC content 0.43
exon number 3
gene id LOC122353893
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11761357 ~ 11764940 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCAGGACCGGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGTCTGTCGACGGACGGCTTTGATTGGAGCAGCCGAAGCAGCAGCTTCCTCGTCCATCTCGGAGGAGACGAGCCACGGTCGTCGGCGGCAACGGCGGGACTCAACCGCTGAAGACGTACGGCTCTGGACGCCAGAAACGCACTGCACTTTAAGCGCccacacacacgtcacacacacacacgtcacacacacGACGCACTGTAAGGGTgagttgccatggcaaccgaCTCCAGGTTCCCAGCGAGGCTGTGTTCAGATTGGAGCACTAACACACCGCATACTACCGAAAACAGTTACAGCAATATAAAGTAGCACATTATACCGCATGCTTCATCCAGAAACGCTCGCTCGGCGCCTTCAGGATCACTCTGGATCAAATTTAGACAATCTGATCAGAAAAAGATATTACGTGCATTTcattgtgggattttttttacgttatttttttatatttgcaattgcatttgtattttatttattatatttatttgcatttgtacgtttatttgcattcatttatttttattgatttgcactcttttttttatttgcatttattatccgtttctgaattgcatttttatttattttacttgcatttgttttaattgcatagttagtttttaattattttatttttaatgcaccgTAGAACTAATCGGCGCTTAATTCATCGAGAGGCATCTAGTGTTAGAACACATTCTGATCACAGACTCGTGatgttcatattcatattgTGATTCCAACACAGTAGTTACAGTTTGATTACGAAATAATGTGCAAGGCATGAATTTGTGTTACTTTTGAGTATCTATCTTTATCTGTTAAAAGCAGTATAACTGGTCCACTAAGATTGAAGCACACTTCTTTAACGTCTTTAAacatatttaggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119599 lncRNA upstream 66904 11690440 ~ 11694453 (+) True G80865
TU119595 lncRNA upstream 77413 11683460 ~ 11683944 (+) True G80861
TU119594 lncRNA upstream 78113 11682924 ~ 11683244 (+) True G80860
XR_006252094.1 lncRNA upstream 88400 11657886 ~ 11672957 (+) False LOC122354243
TU119535 lncRNA upstream 189926 11571102 ~ 11571431 (+) True G80825
TU119632 lncRNA downstream 8678 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA downstream 9786 11774726 ~ 11775122 (+) True G80889
TU120014 lncRNA downstream 86105 11851045 ~ 11857319 (+) False shroom2b
TU120141 lncRNA downstream 440228 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 470252 12235192 ~ 12236177 (+) True G81234
XM_043252113.1 mRNA upstream 46006 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA upstream 46006 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA upstream 46006 11706108 ~ 11715351 (+) False tbce
XM_043252117.1 mRNA upstream 61143 11698324 ~ 11700214 (+) True tomm20b
XM_043251529.1 mRNA upstream 161659 11597790 ~ 11599698 (+) True map1lc3c
XM_043251737.1 mRNA downstream 17719 11782659 ~ 11794097 (+) True si:ch1073-365p7.2
XM_043251738.1 mRNA downstream 17719 11782659 ~ 11786717 (+) False si:ch1073-365p7.2
XM_043251733.1 mRNA downstream 30595 11795535 ~ 11811706 (+) True mfn1b
XM_043251723.1 mRNA downstream 62938 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA downstream 62938 11827878 ~ 11852453 (+) False shroom2b
TU119601 other upstream 61143 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 88419 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 100415 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 231721 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 234315 11525059 ~ 11527042 (+) True rpl37a
TU120019 other downstream 96002 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 427814 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 441815 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 446012 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 817975 12582915 ~ 12585641 (+) True G81268

Expression Profile