RNA id: TU119632


Basic Information

Item Value
RNA id TU119632
length 2383
lncRNA type read_through
GC content 0.34
exon number 2
gene id G80887
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11773618 ~ 11814731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACATACAAGAATAAAGACACAATGATGAGAAATATTAGATTTTACATACaagaaatgaagacaaaattacaacaaattttaattcattattcataaatgtgtacatacatgtgtaacataatatacatataatttaatattcttttaatataattttatctaggtttttatttttacattttttttttttttttttttttttttttttttttttttttTGTGGTTAAAAGTCTTTTTATTGGTTACAATATCAGTGTATGGCAGAATTATCACCAGGTTACTTTACAAATACGAAAAAGTtgagaaacaaaatgttattaaaaatgattatttgaaaatatggcACTGTGAAAGCACACAAGGCACCACACTCCTGGTTTTATCGgctcaaaagaaagaaaaagaaaagattatgAAGCTTACAAATTGAGCCGAAAGTATATTATGAATACTTAAAACATTGGGTTTCAACATGTACtgtaatactaaaatatgttcttttgttGCCAAGTTTGAGtggtctggaaaaaaaaataataaaaaataaaacacgtcATCCGAGGTTTTCATTAAAGACTACATCAGCATTTCAGCCGATCCAGAACCAAGCGCTCAAATCTTCAACATGATCAtaaaaaacaaccacaaaaagAATCACTGATTGGCAAATCTCTCAACCTCTACAGTACCAACACCAGAAATCTGACTTAAAACTAACCGATACTAATAATACCAGCATAATTCCTGTTTAAAAGTGAGACGTTATTACCAAAAGACATCCCTTTTCACAGTTAATCATCATAACATTCAGCAAAACTAAAATCAGTTCCTTTATGGAGCGGCGAAagggtttttcttttaattttatttatgctaACAAGCATCTTCACACTGAAAAAGGACTTcttacagaaaaaagaaaatgacttcAAGCTGCTTTCCGATTCCCTTTTATACAAAAAGGCAAAGTAAAAGAgagattttaaatgcttttcacagTTACATGACGTGTTAAAAGCGTTAACAAATGGCACAAATATTACCGTTTTAAGGCGGTTACTGACAGGcatcaatctggcaacccgcCGCAAACACAGGCATATACTGTCAGAACCGATGGCACTTAAATATGGCGGAAATGAGTAAACGGCTTCATCGCTCTGGTCTACGTTTTTTGatccataataaaaaaatgcctaATATAGTGACTTTTTAGCGGTTGAACTATCCTCACCAGGTAGTGTTCTTAATGTCCACCTGTTTGCACACATTTACGTGCTGAAACTgaggttgttttaaaaaaagctaacagTCTCGGCATTCAAATGAATTAacaccaataaaaatatttatactgttCAAGACGATGCATTCGTGTAACACTGCGACGACTAAATTTAAGTGGAGGGTTTGCGGccattactaaattaaaaaataaaatagaaaatagaaaaaggcGAGTGTTATGAATTCGTTCGAAGCACAGATTTCTTCGTAAGCACCAAGAATAGGGATTTATACACTAGGGTTAGTCACACTGCGATCGCTAGTACTGAAGGCTGAAGATCGAGAGCAGGTCGATTATGGGTTTCATCATCGAAAGCCAAACGAGGCGTCAAAGCGCTTCGAAATTAAACATTCGATCTTCAAGGCTGCAGAAAAATTCAGTGCCTTCTTTCTGAACACACTCGAGCACCAATAAACAATGACTGATTTAGTGGCGTGAGGGGAAacgaagaaaaagaaagttcgGGTTTtcatctgcattaaaaaaaaataattaaaattaattaacgtGTTTTAGGCTTTTGTTTTCCAATGCacaaaaaagtccaaaaaaaaattccacaaaCGTTTTGTAATACAGACTGTTTGCAATAATCCATCTAGTTTAGCGTTGTTTTCTATgtacaacaaataaacaaaaacaaaaagtgaaagattaataaaaatgtcatgggCCAATGATCAactagaaaaatatatacatgaacactatgtatgtatatactatatggtatatacatacacataatgcTGTACATATATACCATATCTATAttcatatacatgtatatttacatattacacaATGACACTTTAATAATCTCTTATTATTCCTGTGGCTGGCAGAGACGATGGGCTTCTCCGCGGGATTCATCTACTTACTGAAAATCATGTGTAATAACTGGAATACAGAGGAGCTGCTGTGGAAAGACGTGGGAACTGGACCGAAGGAAACGAGAGCCGCAGATTTTAAAGTGACGCTCTCAGTTCCAGATCCGAAGGAAACTGTCCCATGATCCCGTGGCCACAGCCATTCCATCGTCAGGTACTCCTAAACAGCTCACTCGGTTGTCATGACCAGCCAAGAcacctg

Function

GO:

id name namespace
GO:0016503 pheromone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119567 lncRNA upstream 7564 11736372 ~ 11766054 (+) False G80847
TU119569 lncRNA upstream 7564 11736372 ~ 11766054 (+) True G80847
TU119568 lncRNA upstream 7564 11741614 ~ 11766054 (+) False G80847
TU119563 lncRNA upstream 8678 11761357 ~ 11764940 (+) False LOC122353893
TU119564 lncRNA upstream 8678 11761639 ~ 11764940 (+) True LOC122353893
TU120014 lncRNA downstream 36314 11851045 ~ 11857319 (+) False shroom2b
TU120141 lncRNA downstream 390437 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 420461 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 420857 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 423087 12237818 ~ 12238356 (+) True G81236
XM_043252113.1 mRNA upstream 58267 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA upstream 58267 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA upstream 58267 11706108 ~ 11715351 (+) False tbce
XM_043252117.1 mRNA upstream 73404 11698324 ~ 11700214 (+) True tomm20b
XM_043251529.1 mRNA upstream 173920 11597790 ~ 11599698 (+) True map1lc3c
XM_043251723.1 mRNA downstream 13147 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA downstream 13147 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA downstream 13147 11827878 ~ 11852452 (+) False shroom2b
XM_043251724.1 mRNA downstream 13147 11827878 ~ 11852449 (+) False shroom2b
XM_043251725.1 mRNA downstream 13147 11827878 ~ 11852446 (+) False shroom2b
TU119601 other upstream 73404 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 100680 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 112676 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 243982 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 246576 11525059 ~ 11527042 (+) True rpl37a
TU120019 other downstream 46211 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 378023 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 392024 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 396221 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 768184 12582915 ~ 12585641 (+) True G81268

Expression Profile