RNA id: TU119951


Basic Information

Item Value
RNA id TU119951
length 1725
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G81074
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11680578 ~ 11685006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAGATCTTATGTCAAATGTCGCTCCTTCACCTCCAGACACACCCCGAAGAAACCGGCGCTACTCGCCAAACGGCATTTCTGCCCTGAGACACAAAAGCGGCAGCTAGGAAGTCGTTCAGAAGCGTCGCAGAGAACACTTGCTCGTAGTTTTTCTCTGTGACGGACAGACTCGCGGGAGACATAGATCAGGTCGCTGTAATAAACCCTCGCTCGTTTAGTGCTTCCTTTATGGATATCTTACAACATCCTGTTTCGGGCCTTTGGAGGAGACGAGAATAGATACGGAGAGCTACAGAATGTTCCAGTCCTTTACAGATAACAATGAAAGCGGGAAGCGTTCTTCATCTGTCCTTCGCCGAAGGAGCtgatagaaatgtttttatcatctgtcaTGATTGAGTGATACCAGAGGGGACGACAAACCCTCTAACGTCCCAGtggtttattttagttagtcctgtttctctgttgtttttgtctcgtaaTCTCGTATCGTCTCGCCTGTGCTTCAGAGCAAGATCTCAGTACTAGCTGATTCGTGTCTCATCAAATCTTTGAGAGTGCTGTAGAAAGGTAACCGTTTTGACTTAGCTTGTGATTCTGACAGAACTGCTAGATGTAGAAATAGAGAATTGTGATTTATATCAATTGAGAagtatgagatataaactttaCAATTTACGAGATGATGTGAACTATATCATCGTGAGATATATCAACGTATTTTTCaagatataaattaaaatttaacattgtgaaaaatcaatttagaattatgagataaaatcAGCTCAGAATTATGAGATCAACTCAGAATTTCAACATATCAACTCATGATTATGAGATATCAACTCAGATTTGTGAGTTAATTGCAGGTAATGCTTTGACGGCACCACCAACATCTGTCCAACTTCCATGAATGTCTAGAGCTAAGAAAGCGTGACCCCTGAGCAATAAATAACAGGTGTTCGGTGGATATCAGAGATGGTTTTCTTCAGATACGTGTGGAGAGGATCAAGCTGGTACACGTTCATAAATCAGGACACGGAGAGGCCAAGGATGGGTCACTTTTGGGAAACCAGACTATCTGTTTCCAGATTTATCAGCGTGAACTTTGACCTTAACGTGAGTCGGTCCTCATCGCTCGGCTGTGAACGAACGAGTGCTTCTCATTCCTGAAGACACACTTCACACACGCTCATCAGATTCATTAATTACAGAGCGGAGCAGTGTATGAACACACACGGATCACAGGAGAACTCTActtcttttacatatttttttggtttttggagtCGCACTTGAgacaatattgttgtttttttttatcctgggTTTCAGACATTAgtagaaataaatgaatgcatgaagaTAGAAAGTTTCCAAGACCATTTAAATAtgaccttgtgtgtgtgtgtgtgtgtgtgtccgtgccAGATAACACTGGCCATGAGCCATAAAGTGTAGCATTCATGCTAATTTCTCTCGTCTGTCGTCTGGAGCGACGCCAAACATGTCAAGAGGACGAGAAAAGCTGGGTGTAGTGAAGAAGGCTTTGACATGAGCTGCTCACGTCCTTCAAGATCAACATCACAAGGTCAAAAGGTCATGCTTctgaaataaagtcatacaagATCCATCTTTGGTTCCCTACAGaaccttgtttgtttttatttttatgccaatTAATGTCTTCGTACTAAAACTTTTTACTGGCATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119935 lncRNA downstream 32466 11637405 ~ 11648112 (-) False G81059
TU119936 lncRNA downstream 32466 11645822 ~ 11648112 (-) True G81059
TU119893 lncRNA downstream 48891 11536500 ~ 11631687 (-) False strn
TU119892 lncRNA downstream 49063 11536500 ~ 11631515 (-) False strn
TU119910 lncRNA downstream 76324 11601912 ~ 11604254 (-) True G81049
TU119931 lncRNA upstream 51373 11736379 ~ 11768444 (-) True G81057
TU119933 lncRNA upstream 51373 11736379 ~ 11766071 (-) False G81057
TU119976 lncRNA upstream 70618 11755624 ~ 11759407 (-) True G81093
TU119977 lncRNA upstream 73731 11758737 ~ 11759407 (-) False G81093
TU119981 lncRNA upstream 99274 11784280 ~ 11786988 (-) True G81097
XM_043252389.1 mRNA downstream 19534 11656978 ~ 11661044 (-) True irf2bp2b
XM_043251824.1 mRNA downstream 84204 11549599 ~ 11596374 (-) True strn
XM_043252193.1 mRNA downstream 176133 11499911 ~ 11504445 (-) True cfap410
XM_043252194.1 mRNA downstream 176133 11500109 ~ 11504445 (-) False cfap410
XM_043251848.1 mRNA downstream 223958 11444822 ~ 11456620 (-) True LOC122353939
XM_043252116.1 mRNA upstream 16156 11701162 ~ 11705953 (-) True rbm34
XM_043251779.1 mRNA upstream 32256 11717262 ~ 11752522 (-) True LOC122353888
XM_043251741.1 mRNA upstream 81825 11766831 ~ 11780808 (-) False ero1b
XM_043251742.1 mRNA upstream 81825 11766831 ~ 11780293 (-) True ero1b
XM_043251754.1 mRNA upstream 127564 11812570 ~ 11822791 (-) True gnb4b
TU119760 other downstream 261248 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 285702 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 395289 11263332 ~ 11285289 (-) True mafgb
XR_006252140.1 other downstream 419458 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119670 other downstream 535559 11140914 ~ 11145019 (-) True srsf7b
XR_006252062.1 other upstream 81825 11766831 ~ 11780809 (-) False ero1b
XR_006252156.1 other upstream 215962 11900968 ~ 11901098 (-) True LOC122354705
TU120112 other upstream 388590 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 760854 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 1133116 12818122 ~ 13057881 (-) False G81512

Expression Profile