RNA id: TU120014


Basic Information

Item Value
RNA id TU120014
length 2158
lncRNA type read_through
GC content 0.41
exon number 2
gene id shroom2b
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11827878 ~ 11857319 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCATTCACAGGACCGTATTCGCCGGCTTGTTTGCCCAGGATTTCAGAGCAGCGGGAAGCCCAGCTTCAGACGGTTTCCAGTCCAACGGCTAGCGGCGAAGACGGAGGAAGCGCTGAGAGAAGATCGGAGGACCGGCTGCTGAAAGGggtcATCGTCGGGAAGCGGAGGTCTCTGGCCCCGCTCCAGGGCCGTAGGTGTGAAGCGGAGCGGAGGATGGCGGTGGCAGGGCACGTGAAACGCTCCGCAGCCCATCACTGCGCTAATTGTTCGGCTGGAAACGCGGCCTGTGCCAAAGCAGTTCTCTCTGAGCTCCACATTGTGCCAAGACCGACGGCAGCGGAACAAAAGGCCTCTCTCAGCGCTCCGGAGAAGCTCCAGACACGAGCTCAGTGAACACGCTTTTCTGAAAtagaaattattgttattattgcaattttattttattcagttcacACCTCACACACCTTGCCATTCTGACGAAAGAGAAAGatgcatataaaaaatgcatatttttgtcgTATAATTGTGAGATCAAAAGTGATGTtagttcaaattaaataattcttatgtgatatttcacattttggacttttttttggaCTTAACGTTTTGCAATTCCGAGGCAAAAGCTGTGAAATATTCAATCAGAGTCTAAACAAGATAAATTGTGAGTTGATGAGTTCGCTTTTTTCTGAATAGCGAGAGGaatccaaacaaaaaaagccaaataaattgtcgtataaaatgtttattccatggcagaaacaggcttccattcaacaattaaaaaaaaaaacattttaaatattttgcaatgaTATTTTAGTTACAGTTTCTCCAATTTTGCATTACCGAATATTTCTTGTTCCATATAACCACATTTTATTTGCGTATTTTACATAAACCGCATCATTATATTTAACGTTCGTGCTTTTTtagcttgtttgttttcacagttttatACCGATGTTTGAATAAATGCGTTTTGATCGTTTAATTAAAGACGGGTGGATGCTTCTAATAAACTATGGGGATTTCTGAGCATGACTGACAGACGTTACGTTCATTGGTTTATGTTCAAACTGTTCAAACACGTAGCTCTCAAACCGATGCCTGGATATACAAGCCGCGGGAATCGTCCGGCACTGAAGAGAGCCGCGTGACGAGGGACGCGTTTCATCACGCCTCATTATCATAAAGGAAGTGGGCAGGAAGTCGTCGGCGCCATGTGCTCCTGATAGTGAACAAACCTTTGTACGTAAAGATGGGAAGATTAGCATACAAAGTCATAATGAGTCCATTGTGGAACGCCAACAATGAGAACGTTTGAGTTGACGGCGTGGACCCGGGACCGGGCCGAGAGACGGACCTCCAGGAGCTGAAAGATGATCAAAGACAGAGTCCTGGTGAAGAACGCTGCTCTGTCGGGTTCATCGGGACACTTCACAGATCACGAACTCTGGCTTTCTCCTGCACGATAATTGTCTTTTGCAACGCAGTTTTGTTTCAGTGAAGATAACCGAAGGTCACCCGTCATTGTTTCTTTCAGCGAGCTCTCCGTGAGATgatattattgcatattatattattgcacCTGGCGGTTTTTGTAAAAGCAGGACtttaaaccagtttttttttttacagcactgAAAATCTGCTTAAAAGATTCCAGCTCTTGCTTTTCAGcagcacgttttttttttttaatcattataatttttatttatttccttaatAATATAAGCAAGGCCATTCAAAGGTTCGAGAGGAACATAAAAAGTCTACTTAAAATCGCGAcgcaaaaataaaagtgaaaaattctCGCTGTTTCTTTGTCACTGATCTGATTAAAAGTATAAACtagtttattataatttttttttcttttgagcagGTAACTCTTTTTATGCAAGTAAAGAATGCGACAACATGTGCCAAATACAGAATGCATTATTATCCCCTGTTTGTTACAAAACACGAATAGAATTGCATTAAcgatataaattaatttatttttttatattgctaCCCGATCTCATGAATAGCAggccaaataaaaatgaaaacttggtATAGACACGTCAAAAAATGGTATATGCGTGAACTGCGTGTCATATTCACGCCAAAACCAATGTGTGTCTATTAATACCACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119632 lncRNA upstream 36314 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA upstream 75923 11774726 ~ 11775122 (+) True G80889
TU119567 lncRNA upstream 84991 11736372 ~ 11766054 (+) False G80847
TU119569 lncRNA upstream 84991 11736372 ~ 11766054 (+) True G80847
TU119568 lncRNA upstream 84991 11741614 ~ 11766054 (+) False G80847
TU120141 lncRNA downstream 347849 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 377873 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 378269 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 380499 12237818 ~ 12238356 (+) True G81236
TU120172 lncRNA downstream 381151 12238470 ~ 12238784 (+) False G81238
XM_043251733.1 mRNA upstream 39339 11795535 ~ 11811706 (+) True mfn1b
XM_043251737.1 mRNA upstream 56948 11782659 ~ 11794097 (+) True si:ch1073-365p7.2
XM_043251738.1 mRNA upstream 64328 11782659 ~ 11786717 (+) False si:ch1073-365p7.2
XM_043252113.1 mRNA upstream 135694 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA upstream 135694 11706108 ~ 11715351 (+) False tbce
XM_043251783.1 mRNA downstream 3340 11860659 ~ 11868523 (+) True LOC122353892
XM_043251730.1 mRNA downstream 13106 11870425 ~ 11883430 (+) True clcn4
XM_043251713.1 mRNA downstream 36029 11893348 ~ 11955071 (+) True LOC122353838
XM_043251714.1 mRNA downstream 36029 11893348 ~ 11955071 (+) False LOC122353838
XM_043251715.1 mRNA downstream 36029 11893348 ~ 11955071 (+) False LOC122353838
TU119601 other upstream 150831 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 178107 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 190103 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 321409 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 324003 11525059 ~ 11527042 (+) True rpl37a
TU120019 other downstream 3623 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 335435 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 349436 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 353633 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 725596 12582915 ~ 12585641 (+) True G81268

Expression Profile